Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01327 ATGATGGAGGAATCTGGAGGAAGTGCTAGCGACGATGGAAAGACATGCCCGCGAGGACACTGGAGACCTGCTGAAGATGATAAACTCCGGCAGCTCGTTGAACAATATGGTCCCCAAAACTGGAACTCAATTGCAGAGAAGCTCCAAGGAAGATCAGGGAAGAGTTGCAGACTTAGGTGGTTTAACCAACTTGACCCTAGAATCAACAGAAGACCATTTACAGAAGAAGAGGAAGAAAGGCTCCTTGCAGCTCATTCTGTTCACGGAAACAAGTGGGCTTTGATAGCTCGTCTCTTCCCAGGCAGAACCGACAATGCCGTAAAGAATCACTGGCATGTAATCATGGCTAGAAAGCAAAGAGAACAGTCCAAGATCTATGGGAAGAGAAGTTGTCATGATCCTCTCAATAACTCTGATACCACCTCTAATGGCTTTCTTGGAAGATATTCATCAAGACCTCTTGGAGATTATAACTCGAAAGAATTCCAGTTTGACACAAGTGGGATCCTTGAATTCCGAAAGTATCCCAAAGAAGAAGTCTTCTTCGATTCATCTTCGATGAAATCAACAACTTCTTGGGCTTTTCCTGGAGCAACAACTACAACAAACTTGCAGGCGCCATTGAGTACTGTTTTCAATGGGGGAGGAAGGGATAATCATAACTTTAGTTCGAGTTCTAGGTATTGCATCATGGAGAGTTCACATAGTACTGCAGACCATTCTCTTTACAGCTACTGCTCTAATTATTCAGCATATGGAGGATATAGGAATTTTAGTGCTCCTGCGCTCTACAACTACAAGATGAATGTTCCTCATACCTTTGGATATCCTAATATCTAG 840 0.4321 MMEESGGSASDDGKTCPRGHWRPAEDDKLRQLVEQYGPQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHSVHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKIYGKRSCHDPLNNSDTTSNGFLGRYSSRPLGDYNSKEFQFDTSGILEFRKYPKEEVFFDSSSMKSTTSWAFPGATTTTNLQAPLSTVFNGGGRDNHNFSSSSRYCIMESSHSTADHSLYSYCSNYSAYGGYRNFSAPALYNYKMNVPHTFGYPNI* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01327 279 ProSiteProfiles Myb-like domain profile. 18 64 IPR001005 -
Eupl13g01327 279 FunFam MYB transcription factor 71 142 - -
Eupl13g01327 279 CDD SANT 81 112 IPR001005 -
Eupl13g01327 279 CDD SANT 21 62 IPR001005 -
Eupl13g01327 279 FunFam MYB transcription factor 18 69 - -
Eupl13g01327 279 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Eupl13g01327 279 SMART sant 17 66 IPR001005 -
Eupl13g01327 279 SMART sant 69 117 IPR001005 -
Eupl13g01327 279 Gene3D - 18 69 - -
Eupl13g01327 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Eupl13g01327 279 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Eupl13g01327 279 Gene3D - 72 133 - -
Eupl13g01327 279 PANTHER MYB PROTEIN-RELATED 18 156 - -
Eupl13g01327 279 MobiDBLite consensus disorder prediction 1 25 - -
Eupl13g01327 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Eupl13g01327 279 Pfam Myb-like DNA-binding domain 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01327 Eupl-Chr13 27331132 27332601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01327 16 173 MYB Transcription Factor Family AT1G17950 62.346 9.12e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g01327 Myb_DNA-bind_6 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01327 K09422 - nnu:104606735 341.273