Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01311 ATGTCTATTCTCGATAGCTACAACGCCGGAGACATAGTAGATTTCATGTTAGACGGCTTAGAACATAACGAATTACAAGAAACGAACAAGTTTCTGCAGTCATGTTTCGACTGTTTTCCAGAGAGTCAGCTATGTATTCCAGAAGACCCAATTGAAGATTTGGAGTGGTTTCCCAACTTCACCGATGATTCTATCTCTTTAAGCGGTTTTCTTACCACCCCAGAAGATACAACCATATCTTTCAGTGGTTTTCCGACGACCCCAGAACGAGAAACAGAAGAAAATCACAATAGAGTCGTCGGAGGAAGGCATGTGTCGATACCAAGTAAGAAACCCAGGAGCAAAAGAGTTTGCGGTCGTGTTTGGTGGTCTTCGAAAAATAAGATTCCTGTGGGGAGGAAGTGTGGTCACTGTGGGGTGGAGAAGACACCGCAATGGAGAGTGGGACCTATGGGACCAAAGACGCTTTGTAATGCATGTGGGGTGAGGTATAAGGCCGGGAGGTTAGTGCCGGAATATCGACCGGCGGCGAGTCCCAGCTTTGATGGTCAGATGCATTCCAATAGCCATAAGAAGATAATGAAAATGAGGATGTCAAGAGATGTGTAG 609 0.4565 MSILDSYNAGDIVDFMLDGLEHNELQETNKFLQSCFDCFPESQLCIPEDPIEDLEWFPNFTDDSISLSGFLTTPEDTTISFSGFPTTPERETEENHNRVVGGRHVSIPSKKPRSKRVCGRVWWSSKNKIPVGRKCGHCGVEKTPQWRVGPMGPKTLCNACGVRYKAGRLVPEYRPAASPSFDGQMHSNSHKKIMKMRMSRDV* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01311 202 FunFam GATA transcription factor 14 130 202 - -
Eupl13g01311 202 PANTHER GATA TRANSCRIPTION FACTOR 125 200 - -
Eupl13g01311 202 SMART GATA_3 129 179 IPR000679 GO:0006355|GO:0043565
Eupl13g01311 202 MobiDBLite consensus disorder prediction 85 111 - -
Eupl13g01311 202 ProSiteProfiles GATA-type zinc finger domain profile. 132 165 IPR000679 GO:0006355|GO:0043565
Eupl13g01311 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 192 - -
Eupl13g01311 202 Gene3D - 131 201 IPR013088 GO:0006355|GO:0008270
Eupl13g01311 202 CDD ZnF_GATA 134 185 IPR000679 GO:0006355|GO:0043565
Eupl13g01311 202 Pfam GATA zinc finger 135 168 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01311 Eupl-Chr13 26934488 26935389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01311 37 202 C2C2-Gata Transcription Factor Family AT4G34680 40.437 3.22e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl13g01311 GATA 1.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01311 - - ming:122072023 252.677