Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01310 ATGCTCGTTGAAGAGAGAACCATAAATGTTGGTGGTGCGGAGTGCTCGCTGTTCGTTCCTTGTTCGAAAGGTGCCACCTTTAATGGACAGTCATTGGGAATTGGCAGCTATGGTACGGATCGAAACTTGGGGGCATTTCAAGTGGACGGGTTTCGTACTTACAAGAGGCGGAAACATTCCGGGTTTAGTTCAAAGAGTAATCTGCAAGAGGACTCAAGGATTCCCATTGAAATAGCTGGTCAATCAGCGGAACAGACCATAAAGGAGCCCCTGGACAAAGTTTTATACAGTAATTCTTGTGAGCAAAACGGTTTTTCTAGGATAGACCGTCCACATCTTCCAGAAGGTTCAGATGATTCCCTACATGGGCACTGGAGAAATGTTGTACTGAAACACATTTTGCAATCATTGGATGTGAGTGAAGGTGGTATCCAGAGCTGCATCCAAGATGCACTTGCATCCAGTCCATTTGGTTCCATTCCCATGGTTAAGATGCGTGTTACCTCTGATCAAATTGCACAGGCACAGGAGCATAAGAGTCATACTTTAGATGGATTCCCGATCGAGCCAAATGATCAAGCAAATGTTCATGTTATCACTGAGCTGTGTCAGCGTGCTTTTCACAATGTCATAGCTTCAGAGAAATTCACCTTGTTGTGTAAGTTGCTTTGTGAGAATTTCCAAGGCATCAAGGTTGACAACTTTTCTAACTTTAGTGTCATCAATTCAAGGATGAAAGAGGGGGCTTATGGACAGTCTCCAATACTTTTCTCTACGGATATTCAACAGGTATGGAGAAAGTTTCAAAAGATTGGTACTGAATTGGTTGCTCTTGCAAAGAGCCTTTCAGACATGTCAAGGACATCCTACCTTGAGCAGGTGGGAGGCTTGGTGAATGGCATTTGTGGAGAAGAAAAACAGGAGGAGATTAATCAAGTTAGTCCGGAAAAGGATTATTTGGGTTTGGTCACCACAGAACGGTTTCTTTCCCAGGAATCTGACCAGTACCCCAAGCCTGAGCAAGCAGAGACTTGTGGCTTGGTCAAAGTTGGTACTTGCATGCACTGTGGAGCCAAAGCAGATGGCAAGGACTGCCTCATCTGTGATTCGTGTGAGGAAATGTACCATGTCTCTTGCATTGAGCCCACTGTTGAAGAGATTCCCCCAAGAAGCTGGTATTGTGCAAACTGCACCGCAAGTGGGATTGAGTCGCCACATGAGAATTGTGCGGTGTGCGAGAGGCTCAATGATCCTAGGACCCAAACTCATGAAAATGGAGATGAAACAGAGGCAATGGCCGAGGAGATGGTTAGCAATTTGGAAGAGAATTCAGATAGTATGGAAGCTGAAGCTGAGCTTCAGCTGCCCAGCGGAAGCAGAACATTGTACTCATGCAAGCTGTGTGGAAGTGGGGAAGTGGATGGCCAAAAGTTCCGTATATGTGGGCATCTCCTTTGCCCTAACAAGTACTACCATGTGAGGTGCCTGACAAGTCAGCAATTAAAATCCTATGGTCCTTGTTGGTACTGCCCTTCTTGCCTCTGTAGAGCTTGCCTCAATGATCAAGATGACGACAAGATTGTCCTCTGCGATAGTTGTGATCATGCATACCATATTTATTGCATGAAACCACCTCGTACTTCCATTCCGAGAGGGAAATGGTTCTGTAGCCAGTGCGATGTAAGGATCCAGGCAATACACAAGGCAAAGAGGGAGTATGAGATTAATGAAAAACAGAAGAGGAAGAACAGCTCAGGAGGAGCAAATGCAGGTGTAGGATCAGTGGATATGCTCTTAAGTGCAGCCGAGAAGCTGAAATATGAAGAGAAATTGGCTGCCACAGAGAGCAAGAGATAA 1857 0.454 MLVEERTINVGGAECSLFVPCSKGATFNGQSLGIGSYGTDRNLGAFQVDGFRTYKRRKHSGFSSKSNLQEDSRIPIEIAGQSAEQTIKEPLDKVLYSNSCEQNGFSRIDRPHLPEGSDDSLHGHWRNVVLKHILQSLDVSEGGIQSCIQDALASSPFGSIPMVKMRVTSDQIAQAQEHKSHTLDGFPIEPNDQANVHVITELCQRAFHNVIASEKFTLLCKLLCENFQGIKVDNFSNFSVINSRMKEGAYGQSPILFSTDIQQVWRKFQKIGTELVALAKSLSDMSRTSYLEQVGGLVNGICGEEKQEEINQVSPEKDYLGLVTTERFLSQESDQYPKPEQAETCGLVKVGTCMHCGAKADGKDCLICDSCEEMYHVSCIEPTVEEIPPRSWYCANCTASGIESPHENCAVCERLNDPRTQTHENGDETEAMAEEMVSNLEENSDSMEAEAELQLPSGSRTLYSCKLCGSGEVDGQKFRICGHLLCPNKYYHVRCLTSQQLKSYGPCWYCPSCLCRACLNDQDDDKIVLCDSCDHAYHIYCMKPPRTSIPRGKWFCSQCDVRIQAIHKAKREYEINEKQKRKNSSGGANAGVGSVDMLLSAAEKLKYEEKLAATESKR* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01310 618 SUPERFAMILY FYVE/PHD zinc finger 349 399 IPR011011 -
Eupl13g01310 618 ProSiteProfiles Zinc finger PHD-type profile. 512 562 IPR019787 -
Eupl13g01310 618 ProSitePatterns Zinc finger PHD-type signature. 353 397 IPR019786 -
Eupl13g01310 618 SUPERFAMILY FYVE/PHD zinc finger 514 562 IPR011011 -
Eupl13g01310 618 PANTHER OS02G0192300 PROTEIN 271 444 - -
Eupl13g01310 618 Gene3D - 276 400 - -
Eupl13g01310 618 Pfam PHD-finger 515 561 IPR019787 -
Eupl13g01310 618 Pfam PHD-finger 353 399 IPR019787 -
Eupl13g01310 618 SMART PHD_3 352 398 IPR001965 -
Eupl13g01310 618 SMART PHD_3 464 514 IPR001965 -
Eupl13g01310 618 SMART PHD_3 515 560 IPR001965 -
Eupl13g01310 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 566 IPR013083 -
Eupl13g01310 618 ProSiteProfiles Zinc finger PHD-type profile. 350 400 IPR019787 -
Eupl13g01310 618 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01310 Eupl-Chr13 26876802 26908391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01310 514 586 C2H2 Transcription Factor Family AT3G01460 36.986 1.08e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl13g01310 PHD 1.8e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01310 - - ming:122060610 730.709