Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01278 ATGGGAGTTTTCGGGCCTTTGAGCTTCTGGGTATCCCTGTATTTCACATTTACTATCTATTTCAGAGGTTTAATGGCCGAGGACGAGAGAAAAATCCCTCCCCTGAACACCATGAAAAATGATGATATTGGTGGTATGGTTACTTTAAACCCAACTCCTCCTCCTCCTCCGCTGCTAGCAGCACCACCTCCTCTCCCTATTGCCGCTACCAAATCCAACATAGCTCCGTTTAGACCGAGCATCGCTGTGATCGTCGGGGTTCTCACGACCATGTTCTCCATTACATTTCTTCTCCTTCTGTACGCTAAACACTGTAAGAGGAGCAACGGCGCTGGTGGGTACTCTGGGAACCCTAATTCTGGGGCACCCACTTCGTCTGGAGCGAGGAAGAACTCGGGGGTCGATCGCTCGGTGATTGAGTCGCTACCAATTTTCAGATTCGGGTCTCTCAGAGGTCAAAAGGAGGGGCTTGAGTGCGCTGTTTGCTTGACCAGGTTCGAGCCCACGGAGGTGTTGAGGTTGCTGCCCAAATGCAAGCACGGGTTCCATGTCGAGTGTGTCGATACCTGGCTCGACGCCCACTCAACCTGCCCTCTCTGCCGCTACCGAGTCGACCCGGAAGATGTTCTCCTGGTGGAAGAAATAAAACTCGGAGAAGATTACCGTCGTAGTGGAAGCGAAGTCGTTGCCGCTGAGTTCGAAGCCCGAAATCGGGACGAGTTTTCAAACCCGGGGGAGACTGGGTTTCGAAGAGTTTCAGGTCGTCACTCGTCGGCCGGGGAGAAAACGAGTCATTTTCTGCACATCCTGGTGCAACGACCCGGCGACTCGGACCCAGACGACTCGTCATCATCGGTTTCCAGAAGATCACTCGATAGCGCGAGCTTGAGAAGGAAAAAGGAATCTGTAGCTGTGGGATGCTTTGACCGCGGGGGCCGTAAAGACGGACTTCTGTTATCAGAAGCAGCGACGGACGCTGATAGGGAAAGCTTCGTACGGAGGTTTGAGCACCGGATCATTGTGTCCGGGGCAGGTGGGTTCCAACGCCGGTGGAGCGATCTACAGCCATCGGATATGTTGTTTATACAATCGGAGATGATAATGACAGAAAGCGGTCGGTATTCATCGTCGGGCTCTCGACCGTGGATTTCACTGAAGCAGATGAGAGAGGAGAGAGAAGAGGTTGGGGTGAAAGTGGGAGAGGAGGAAGAGAAGATGATTGATGGGAATGGCAGAAACGTAATAAATTCAAGAAGCGTGTCGGAAATCACGGGGTTAAGCAGGTTCTCGAACAGAACAAGTGGAACCTACCAAGCCCGGGTCGGTCGAGAAGAACGAGAAGCGAGGGGGGCTGTAAAGAGGTTGTTGGGGTGGGCATCCTTGCAGCGAAGTGTACGGCTTAAACAAACAAACAGAGGTAGTCTAGTTGTGTAG 1434 0.5251 MGVFGPLSFWVSLYFTFTIYFRGLMAEDERKIPPLNTMKNDDIGGMVTLNPTPPPPPLLAAPPPLPIAATKSNIAPFRPSIAVIVGVLTTMFSITFLLLLYAKHCKRSNGAGGYSGNPNSGAPTSSGARKNSGVDRSVIESLPIFRFGSLRGQKEGLECAVCLTRFEPTEVLRLLPKCKHGFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEEIKLGEDYRRSGSEVVAAEFEARNRDEFSNPGETGFRRVSGRHSSAGEKTSHFLHILVQRPGDSDPDDSSSSVSRRSLDSASLRRKKESVAVGCFDRGGRKDGLLLSEAATDADRESFVRRFEHRIIVSGAGGFQRRWSDLQPSDMLFIQSEMIMTESGRYSSSGSRPWISLKQMREEREEVGVKVGEEEEKMIDGNGRNVINSRSVSEITGLSRFSNRTSGTYQARVGREEREARGAVKRLLGWASLQRSVRLKQTNRGSLVV* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01278 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
Eupl13g01278 477 SMART ring_2 159 200 IPR001841 -
Eupl13g01278 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 69 456 - -
Eupl13g01278 477 MobiDBLite consensus disorder prediction 112 132 - -
Eupl13g01278 477 MobiDBLite consensus disorder prediction 277 291 - -
Eupl13g01278 477 MobiDBLite consensus disorder prediction 272 293 - -
Eupl13g01278 477 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Eupl13g01278 477 Pfam Ring finger domain 158 201 IPR001841 -
Eupl13g01278 477 Coils Coil 385 405 - -
Eupl13g01278 477 MobiDBLite consensus disorder prediction 112 133 - -
Eupl13g01278 477 SUPERFAMILY RING/U-box 138 206 - -
Eupl13g01278 477 CDD RING-H2_EL5-like 158 201 - -
Eupl13g01278 477 FunFam RING-H2 finger protein ATL43 134 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01278 Eupl-Chr13 24860048 24862248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01278 79 459 C3H Transcription Factor Family AT5G05810 47.264 8.65e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01278 K19041 - nnu:104603147 478.404