Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01277 ATGAACAACGGCAACACCAAGAAGCGAGACCCTCCCCCTTCATCTTCAGTCCAACAACCACAAAAGCGTTTCCAAGTCCAACCAACAATGGAAGAAGAAGATATGGACGAGGACGTGTTCTTTGAGGAGACCCTACTCCGAGAAGAAGAAGAAGCTCTGATCCTCCGCGACGAGGAAGACCGTCGTCAAGCCCTCGCTTCCCGTCTCTACAAATGGAAGCGACCTTCCCTCTCTCCTTCCTATCTCTCCCAATCTAGCAACATCATTTTCCAGCAATTGGAGATCGATTACGTGATCGGCGACAGCAATAGAGAGTTGCTGCCGATTTCGTCAGGCCCTGCCGCCATACTCAGAATCTTCGGCGTCACAAGGGAAGGACATAGTGTTTGCTGTCATGTTCACGGCTTCGAGCCATATTTCTACATCAACTGCCCTCCAGGAATGGGCCCCGACGATATATCCCGTTTACATCAAATTCTTGAGGTAAGGATGAGGGAAGTGAATAGGAACAGTAAGGTTCCCAAATTTGTCCTACGGATTGAGTTGGTGCAGAAGAGGAGCATTATGTATTACCAGCAACAGCAGTCTCACCCTTTCCTCAAGATCGTAGTCGCATTGCCAACGATGGTTGCTGGTTGTCGAGGCATCCTTGAGAGTGGCATACAAATTGATGGCCTTGGTACAAAAAGCTTCATGACATACGAAAGCAATGTTCTGTTTGCTCTTCGTTTCATGATTGATTGCAACATTGTTGGGGGCAATTGGATAGAAGTTCCTGCTGGGAAATATAAGAAGAGAACAAAGACTATGTCATATTGCCAACTTGAATTTGATTGTCTGTATTCCGAATTAATTAGCCATGATCCAGAGGGGGAATTCTCTAAAATGGCTCCATTCCGCATATTGAGTTTTGACATCGAGTGTGCTGGTCGCAAAGGGCTTTTTCCTGAGCCTAGCCATGACCCTGTTATTCAGGTGGCTAATCTAGTCACTCTACAAGGAGAGGACCATCCATTTGTGCGCAACATCATGACCCTTAAGTCATGCTCTCCGATTGTTGGTGTTGACGTGATGTCATTTGATACAGAAAGAGAACTTCTGCTAGCTTGGAGGGATTTTGTATGCAAAGTGGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGATTTGCCGTATCTCATTGAGAGAGCTGAGGCCTTAAAAATAGCAGAATTTCCAATCCTGGGCCGCATCAGGAGCAGCAGGGTTCGTGTCAAGGATGCAACTTTTTCATCAAGACAGTATGGAACACGGGAGAGTAAAGAAGTTACAGTTGAAGGGAGAGTTCAATTTGATTTGCTTCAGGTAATGCAAAGGGATTATAAGCTAAGTTCGTATTCACTGAACTCTGTTTCGGCACACTTTCTTGGGGAGCAGAAAGAGGATGTGCACCACTCAATAATATCTGATCTTCAGAATGGGAACTCCGAAACTAGGAGGCGTCTTGCTGTCTATTGCTTGAAGGATGCTTATCTTCCACAACGGCTTTTGGACAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGGGTCACAGGTGTCCCCATCTCTTTTCTGCTTTCAAGAGGGCAAAGCATTAAGGTTCTTTCTCAGCTTCTTAGGAAGGCAAAACAGAAGAACCTTGTTATTCCTAGTGTCAGAAAGCAGGGATCTGGAGAAGGAACATTTGAGGGTGCAACTGTTTTGGAGGCCAAGACAGGGTTCTATGAGAAGCCCATTGCGACATTGGATTTTGCATCTTTGTATCCATCCATCATGATGGCATATAATCTTTGTTACTGCACTCTGGTAACGCCTGAAGATGTCCGCAAACTCAACCTGCCACCAGAATGTGTTAACAAAACTCCATCTGGTGAAACATTTGTCAAATCAAATCTACAGAAGGGTATACTTCCAGAAATTCTTGAAGAACTGTTGACTGCTCGTAAAAGAGCAAAAGCCGATCTGAAGGAAGCAAAGGATCCCATGGTGAAGGCTGTGCTGGATGGTCGCCAGCTGGCCCTAAAGATAAGTGCAAACTCTGTATATGGATTTACAGGAGCTACTGTTGGCCAATTACCATGTATAGAGATATCTTCTAGTGTAACAAGCTATGGTCGACAGATGATTGAGCACACAAAGAAGCTTGTGGAAGAGAGATTCACTACACTAGGTGGCTATGAACACAATGCTGAGATCGTGTATGGGGACACTGATTCGGTTATGGTACAATTCGGTGTCCCTACTGTAGAAGCAGCAATGAGCTTGGGGAGAGAAGCTGCTGAATACATTAGTGGCACTTTCATCAAGCCCATCAAACTAGAGTTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGAGATATGCTGGACTGTTTTGGACAAATCCAGATAAGTTTGACAAAATGGACACTAAAGGCATTGAAACAGTTCGAAGGGACAATTGCCTACTGGTGAAAAACCTGGTAACCGAATGCCTTCACAAAATATTAATTGACCGAGACATTCCTGGTGCTGTTCAGTATGTCAAGAATACCATTTCAGATCTTCTTATGAACCGCATGGATTTGTCACTTTTGGTTATAACTAAGGGTCTGACGAAAACAGGAGATGATTATGCAGTAAAGGTAGCGCATGTTGAACTTGCTGAACGCATGCGCAAGCGAGATGCTGCTACTGCACCCAACGTTGGGGATCGTGTACCATATGTCATTATTAAAGCTGCAAAAGGTGCCAAGGCTTATGAAAGGTCAGAGGATCCTATCTATGTGCTAGAGAATAACATACCAATAGACTCTCAATACTACCTTGAAAATCAAATTAGCAAGCCACTTTTGAGAATATTTGAGCCCATTCTAAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACAAGAGCTGTTTCCATTTCAACTCCTTCAAACAGTGGCATAATGAAGTTTGCTAAGAAGCAGCTCAGTTGTCTTGGCTGCAAAGCTGTAATTAGTAATGCAGAGCAAACTCTCTGCTCACATTGTAAAGGAAGAGAAGCTGAACTGTACTGCAAAACAGTAGCTAATGATATATCAGATGTATCCATTGGACTGTATCGAATTTCCAGTATGATCAACACACTCAACTAA 3159 0.4346 MNNGNTKKRDPPPSSSVQQPQKRFQVQPTMEEEDMDEDVFFEETLLREEEEALILRDEEDRRQALASRLYKWKRPSLSPSYLSQSSNIIFQQLEIDYVIGDSNRELLPISSGPAAILRIFGVTREGHSVCCHVHGFEPYFYINCPPGMGPDDISRLHQILEVRMREVNRNSKVPKFVLRIELVQKRSIMYYQQQQSHPFLKIVVALPTMVAGCRGILESGIQIDGLGTKSFMTYESNVLFALRFMIDCNIVGGNWIEVPAGKYKKRTKTMSYCQLEFDCLYSELISHDPEGEFSKMAPFRILSFDIECAGRKGLFPEPSHDPVIQVANLVTLQGEDHPFVRNIMTLKSCSPIVGVDVMSFDTERELLLAWRDFVCKVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRSSRVRVKDATFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPSVRKQGSGEGTFEGATVLEAKTGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPMVKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEERFTTLGGYEHNAEIVYGDTDSVMVQFGVPTVEAAMSLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKVAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDSQYYLENQISKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCLGCKAVISNAEQTLCSHCKGREAELYCKTVANDISDVSIGLYRISSMINTLN* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01277 1052 Gene3D - 818 973 IPR042087 -
Eupl13g01277 1052 CDD DNA_polB_delta_exo 294 522 - -
Eupl13g01277 1052 SMART polmehr3 297 756 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl13g01277 1052 ProSitePatterns DNA polymerase family B signature. 744 752 IPR017964 GO:0000166|GO:0003676
Eupl13g01277 1052 FunFam DNA polymerase 818 974 - -
Eupl13g01277 1052 Pfam DNA polymerase family B 530 963 IPR006134 GO:0000166|GO:0003677
Eupl13g01277 1052 Gene3D - 298 516 IPR036397 GO:0003676
Eupl13g01277 1052 CDD POLBc_delta 571 964 - -
Eupl13g01277 1052 FunFam DNA polymerase 94 269 - -
Eupl13g01277 1052 FunFam DNA polymerase 645 697 - -
Eupl13g01277 1052 MobiDBLite consensus disorder prediction 1 34 - -
Eupl13g01277 1052 NCBIfam DNA polymerase (pol2) 243 961 - -
Eupl13g01277 1052 MobiDBLite consensus disorder prediction 1 26 - -
Eupl13g01277 1052 FunFam DNA polymerase 337 571 - -
Eupl13g01277 1052 SUPERFAMILY Ribonuclease H-like 114 536 IPR012337 -
Eupl13g01277 1052 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 73 1026 - -
Eupl13g01277 1052 Gene3D Palm domain of DNA polymerase 572 801 IPR023211 -
Eupl13g01277 1052 Gene3D Helix hairpin bin 645 697 - -
Eupl13g01277 1052 PRINTS DNA-directed DNA-polymerase family B signature 589 602 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl13g01277 1052 PRINTS DNA-directed DNA-polymerase family B signature 742 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl13g01277 1052 PRINTS DNA-directed DNA-polymerase family B signature 681 693 IPR006172 GO:0000166|GO:0003676|GO:0003887
Eupl13g01277 1052 Pfam DNA polymerase family B, exonuclease domain 123 466 IPR006133 -
Eupl13g01277 1052 SUPERFAMILY DNA/RNA polymerases 555 965 IPR043502 -
Eupl13g01277 1052 Gene3D DNA Polymerase, chain B, domain 1 93 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01277 Eupl-Chr13 24707300 24746709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01277 35 1032 Core DNA Replication Machinery Family AT5G63960 81.514 0.0 1725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01277 K02327 - mof:131150783 1801.56