Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01263 ATGTCTGTCACCCGAACTTCTCGTGTTGGGATCAATGGCATAAGATCCTATGGTCTATACTGGTGCTACCAATGCCAGCAAACGGTCAGGGTCGCCTCCTCAAACCCATCTGATATCGTCTGCCCCCGTTGTTTTGGCGAATTTCTCTACGAGCTTGACATAGCCAGGCCTAGGATTGTCCTCGACCTCACCGGCCTCCAGCCCTCTCCTGAAACCCGGTTATTGGAGGCCCTCTCTCTCATGCTCGACCCAAGAACCCACCCAAGAAATCGTAATTCCCATAGGAGAAATCGGTGGGCAACAGAAACTGAAATTGGAGAACATCCTCAGCCTTGGATTATCTTCCAACCCTCTGATCCACCAAACAGAACCATTCCCCCTCCAGTAAATATGGTGCCCCCTACTGTTGATCCCAGGAATTACTTCATTGGGCCGGGATTGAACGAGCTGATCGATGAACTTACTCAAAATGACAGGCCGGGGCCGCCTCCAGCACCCACTTCAGCAATTGATGCAATGCCAACAGTGAAGGTCACGCCAACCCATTTGATCAATGATTCACATTGTCCAGTTTGCAAGGAGGAATTTAAGGTTGGTGAAGAAGCGAGGGAAATGCCGTGCAAACATGTCTATCATTCTGATTGCATTGTTCCTTGGTTGCGGATTCACAATTCCTGTCCAGTTTGTCGGCACGAGCTGCCCGGTTCTTTCAGAAATAACCTTCAGATTAATGATGATGATGAGGATGATGATGAAGTTTCTCGTGTTGAAAGGGTTCGGAACCATCGGCGCTGGAGGTGGAGTCAGTTGTTCTCTTTATGGCCTTTTCGTTCACAAGCAAATTGGAGGTATCAACACCATAATCCTCACGATGACAGCATTACTGCTAATCGTCGTGTTAACTCCTGGTGGCGCTCTTGGTTTCTTCTCTAG 933 0.4877 MSVTRTSRVGINGIRSYGLYWCYQCQQTVRVASSNPSDIVCPRCFGEFLYELDIARPRIVLDLTGLQPSPETRLLEALSLMLDPRTHPRNRNSHRRNRWATETEIGEHPQPWIIFQPSDPPNRTIPPPVNMVPPTVDPRNYFIGPGLNELIDELTQNDRPGPPPAPTSAIDAMPTVKVTPTHLINDSHCPVCKEEFKVGEEAREMPCKHVYHSDCIVPWLRIHNSCPVCRHELPGSFRNNLQINDDDEDDDEVSRVERVRNHRRWRWSQLFSLWPFRSQANWRYQHHNPHDDSITANRRVNSWWRSWFLL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01263 310 SMART ring_2 189 229 IPR001841 -
Eupl13g01263 310 CDD RING-H2_RNF126-like 189 230 - -
Eupl13g01263 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 236 IPR013083 -
Eupl13g01263 310 Pfam Ring finger domain 188 230 IPR001841 -
Eupl13g01263 310 SUPERFAMILY RING/U-box 169 234 - -
Eupl13g01263 310 Pfam zinc-ribbon 20 51 IPR039525 GO:0061630
Eupl13g01263 310 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Eupl13g01263 310 FunFam E3 ubiquitin-protein ligase RING1-like 153 236 - -
Eupl13g01263 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01263 Eupl-Chr13 24056129 24057399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01263 8 295 C3H Transcription Factor Family AT1G68180 31.525 2.77e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01263 K11982 - nnu:104608492 389.037