Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01259 ATGGCAGAAACCAGAAATAGCAGAAAACACTTCAAGAAAAACCACCAAAACCAAAAAAACCAACCCCAGAAAACAAAGAAACCACCTTATTGGGCAGTTGTGAGGCGCCTTGTTTCCTGCAAGTATCTCCAAACCGGAGAACAACAACAACCACAACCCATGGAGAGAAATAATGATAAGAGATGCAAGAAAATTGGGTTCTCTGGTTCTCTTTGCAACAACACAAGGGTCGTGCACAGGCCTGAAGCATCTCCTCATGAAGATTACAAGAAATGGGGTTCAATGGGTTCCTGTAATACTAATGGTTCTTTGTCGTCGCCATTGTCACTTTTATCTTCTGGTTCTTCCATTGGTGGGTCTTTTGGAGGAATGCATTTAAGGAGACTTTCAGGTTGTTATGAGTGTAGAACGGTTGTGGATCTAGCTCATGGGGTCTCAAGAGATCCTTCAATGAGGGCCACTGTTTGTTCTTGTCCTGAATGTGGAGAGATTTTCACGAAACCTGAGAATTTGGTGCTTCACCAGTCTATGATACATGCAGTATCTGAACTGGGTCCCGAAGATACTAGCAGAAACATTGTAGAGATCATATTCCAATCAAGTTGGCTGAAGAAACAAACTCCAATCTGCAAGATTGACAGGATCCTCAAAGTCAACAACAGTCAGAAAACCATCACTAGATTCGAAAATTACAGGGAATCCATCAAAGGGAAAGCAAACAAGCTTGCGAACAAGCACCCGAGATGTGTCGCAGATGGTAACGAGCTCCTGAGGTTCCACTGCACGACTTTTATTTGTTCTCTTGGCATGAATGGGTCTTCAAATCTCTGCAATTCGATCCCCCAATGTAACATTTGCAGCATTATAAGAGATGGATTCAAGATAGATGGAATCATTGGAGGAGGAATATGCACAACGGCTACTAGTGGAAAAGCCCATGACAATGCTCAGATTACGTTGGAAGATGATAAGCGGGCGATGTTGGTTTGCCGAGTGATCGCGGGGACGGTGAAGAAGAACCGAGACACTGATGTAGAAGAGTTCGATTCGGTAGCCGGACACACAGAAATTTACTCTAATTTAGATGAGCTATTTGTGTTTAATCCCAAGGCTATATTGCCTTGTTTTGTTGTGATCTATAGTGGCTTTTAA 1152 0.4288 MAETRNSRKHFKKNHQNQKNQPQKTKKPPYWAVVRRLVSCKYLQTGEQQQPQPMERNNDKRCKKIGFSGSLCNNTRVVHRPEASPHEDYKKWGSMGSCNTNGSLSSPLSLLSSGSSIGGSFGGMHLRRLSGCYECRTVVDLAHGVSRDPSMRATVCSCPECGEIFTKPENLVLHQSMIHAVSELGPEDTSRNIVEIIFQSSWLKKQTPICKIDRILKVNNSQKTITRFENYRESIKGKANKLANKHPRCVADGNELLRFHCTTFICSLGMNGSSNLCNSIPQCNICSIIRDGFKIDGIIGGGICTTATSGKAHDNAQITLEDDKRAMLVCRVIAGTVKKNRDTDVEEFDSVAGHTEIYSNLDELFVFNPKAILPCFVVIYSGF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01259 383 ProSitePatterns Zinc finger C2H2 type domain signature. 156 179 IPR013087 -
Eupl13g01259 383 Gene3D - 180 381 - -
Eupl13g01259 383 MobiDBLite consensus disorder prediction 1 28 - -
Eupl13g01259 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 184 IPR013087 -
Eupl13g01259 383 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 31 380 - -
Eupl13g01259 383 SUPERFAMILY ADP-ribosylation 181 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01259 Eupl-Chr13 23895234 23896712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01259 26 380 C2H2 Transcription Factor Family AT1G75710 42.584 1.03e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g01259 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01259 - - ming:122075893 519.235