Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01228 ATGGATATGGAGGACGAGATCCAGTCAAGCATCCGGTCATTGCAGCTGGACTCAGAAGAAGATAATAATGATGGAATGTCTGCACCCGAAGAAGTAAAGCCGGAAGAAGTAGAAAAAACAGATAAAATTGAAGAAGATATCAGGGATGAGGTCCAGTCGAGTTATAAAACATCAACGATGGAACCTAAAGTTAAAGATAAGGAAATGATTGCTCTAGAGGATGTTGAAGAATTGGATGAGAAGGAATTAAAGAGGAAGCGACACCTGAATGTGGTATTTATTGGTCATGTTGATGCTGGTAAGTCCACTACTGGGGGGCAGATACTTTTCCTAAGTGGTCAGGTTGATGACCGAACAATACAGAAATATGAGAAGGAAGCGAAGGATAAGAGTCGAGAAAGTTGGTACATGGCATATATTATGGACACAAATGAGGAGGAGCGTGTAAAGGGAAAGACAGTGGAGGTTGGCAGAGCACATTTTGAGACGGAAACCACAAGATTCACAATCCTGGATGCTCCGGGTCACAAGAGCTATGTCCCAAACATGATCAGTGGAGCATCTCAAGCTGATATTGGGGTTCTGGTAATATCTGCTCGGAAAGGGGAATTCGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAACATGTCTTACTTGCCAAAACCTTGGGTGTGACTAAGTTGCTTGTTGTTGTCAACAAAATGGATGATCCTACTGTGGGATGGTCTAAAGAAAGGTATGATGAAATAGAATCGAAGATGACACCTTTCCTAAAAGCTTCGGGTTACAATGTGAAGAAAGATGTTCAATTTCTCCCAATATCTGGTCTCCATGGTGCTAACATGAAAACTAGGGTGGAAAAGAGTGCATGTTCATGGTGGAATGGTCCATGCCTTTTTGAAGCCCTGGATGCCATAGAACTTCCTCCACGAGATCCCAAAGGTCCAGTCAGGTTGCCAATTATTGACAAATTTAAAGACATGGGAACTGTTGTAATGGGAAAAATAGAATCTGGTAGCATTCGGGAGGGTGATACCTTGTTGGTCATGCCTAATAAGGCACAGGTGAAAGTGCTTGCAGTACATTGTGATGAAGATAAAGTAAAATGTGCTGGGCCTGGTGAAAATGTCAGGGTCAAATTGTCTGGGATTGAAGAAGAAGACATATTGTCTGGTTTTGTCCTATCAAGCGTCGTGAAACCAATAGCTGCAGTTTCTGAGTTCGATGCCCAGTTGCAGATCCTCGAGTTGCTTGACAATGCAATTTTTACTGCTGGTTACAAGGCAGTATTGCACGTTCATTCTGTCGTTGAGGAGTGTGAGATTGTTGAGCTGCTACTGCAGATTGATCCAAAGACAAAGAAACCCATGAAGAAAAAGGTTCTTTTTGTGAAGAATGGTGCTGTTGTTCTATGCCGCGTCCAGGTGAATAACTTGATATGCGTCGAGAAGTTCTCCGAATTTCCACAGCTTGGAAGGTTTACTCTTCGTACTGAAGGTAACAAACAAAAAACACATTGTCTACTCACACATTCATGCTACTCTTATATGTTATGCAGTTACACAATTAGTGTCTTTACAGGAAAAACAGTTGCAGTGGGGAAAGTTACTGAGCCCCGATCTTCAACAGTTTTGGCATGA 1644 0.424 MDMEDEIQSSIRSLQLDSEEDNNDGMSAPEEVKPEEVEKTDKIEEDIRDEVQSSYKTSTMEPKVKDKEMIALEDVEELDEKELKRKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVTKLLVVVNKMDDPTVGWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLHGANMKTRVEKSACSWWNGPCLFEALDAIELPPRDPKGPVRLPIIDKFKDMGTVVMGKIESGSIREGDTLLVMPNKAQVKVLAVHCDEDKVKCAGPGENVRVKLSGIEEEDILSGFVLSSVVKPIAAVSEFDAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLLQIDPKTKKPMKKKVLFVKNGAVVLCRVQVNNLICVEKFSEFPQLGRFTLRTEGNKQKTHCLLTHSCYSYMLCSYTISVFTGKTVAVGKVTEPRSSTVLA* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01228 547 Gene3D Translation factors 315 399 - -
Eupl13g01228 547 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 314 400 - -
Eupl13g01228 547 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 66 310 - -
Eupl13g01228 547 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 312 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 SUPERFAMILY Translation proteins 309 399 IPR009000 -
Eupl13g01228 547 Gene3D - 68 309 IPR027417 -
Eupl13g01228 547 MobiDBLite consensus disorder prediction 26 52 - -
Eupl13g01228 547 Pfam Elongation factor Tu domain 2 330 396 IPR004161 GO:0005525
Eupl13g01228 547 CDD eRF3_II 317 398 - -
Eupl13g01228 547 Pfam Elongation factor Tu GTP binding domain 86 299 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 CDD EF1_alpha 90 311 - -
Eupl13g01228 547 CDD eRF3_C_III 405 538 - -
Eupl13g01228 547 PRINTS GTP-binding elongation factor signature 169 179 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 PRINTS GTP-binding elongation factor signature 229 238 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 PRINTS GTP-binding elongation factor signature 185 196 IPR000795 GO:0003924|GO:0005525
Eupl13g01228 547 FunFam Putative translation elongation/initiation factor family protein 404 512 - -
Eupl13g01228 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 321 IPR027417 -
Eupl13g01228 547 PANTHER TRANSLATION FACTOR 79 540 - -
Eupl13g01228 547 Gene3D Translation factors 404 540 - -
Eupl13g01228 547 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 407 501 IPR009001 -
Eupl13g01228 547 MobiDBLite consensus disorder prediction 8 22 - -
Eupl13g01228 547 Pfam Elongation factor Tu C-terminal domain 402 501 IPR004160 -
Eupl13g01228 547 MobiDBLite consensus disorder prediction 1 62 - -
Eupl13g01228 547 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 142 157 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01228 Eupl-Chr13 22406965 22446350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01228 84 498 Eukaryotic Initiation Factors Gene Family AT5G60390 39.141 3.96e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01228 K03267 - nnu:104589660 821.617