Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01216 ATGAGTAATTCAATAAATGAGTGTGAGGACGAGATGCGCTCGGAGGATCAGATGGATTCAGCTCCAATTGACGAAGGTAGCTGTGGAGGAGGAGGGATTATCCTGAAGAAAGGGCCATGGACATCAGCTGAAGATGCAATTTTGGTGGATTACGTCAAGAAGCATGGAGAAGGGAATTGGAATGCTGTTCAGAAAAACTCAGGCCTGTTCCGTTGTGGCAAAAGCTGCCGTCTGCGATGGGCCAATCACCTGAGACCGAACTTGAAGAAGGGTGCTTTCAGTGCTGATGAAGAACAGCTGATCATTGAACTCCATGCCAAGATGGGGAACAAATGGGCTCGGATGGCTGCACAATTGCCTGGACGTACAGATAATGAGATAAAGAACTTCTGGAATACCCGGATCAAGAGGCGGCAACGAGCTGGTTTACCACTTTATCCTCCTGATGTGTGTTCGCAGGCACTGAATGAGAGTCGGCAGACCCAGAACACCAACGAACTCAACATTGGGGATACACGGCATCATGACCTGTTACAAGCAAACAATTACGAGATTCCTGATGTCATATTCGAGGATTTAAATGCTTGTCAAGGGGTTTTATCTTATGCACCAGCACTTCCTCATATTTCTGCTGGTAGTGTACTGACTCAAGGTATGGGTTCATCTCAAAATTACAGCTTCATGCCCCCAGCAATGCATCGCCACAAACGACTTCGAGAATCAGAAACCTTGTTCCCTGGTTTTAACGGTAATGTCACATGTGGACTCCCATCGTTGAACCATTTTCAGATTGATGCTTGTGAGAAGCTTCGTCAGCCGCTTGGGTTTTCTTTTCTGGATGATCCTGACCCTAACCGCACAAGTCCTCCAATCTTTGGTGTAATGCCTGGCAGCCATGCCCTTTCAAATGGCAATATCTCTGCTTCTATGCCCATTCATGGGGCTGCGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATCTTGTTAGCTGGGGAATGACTCCTCCCTTCACGCCAACTGGTCAGGTGCATTCAGTTGGTCTTTCACCGCCGAACAGTGGCATGTTGGACATATTACTTCATGAGTCACAGACTCTAAATAGCACAGAGAATAAGTCATCTGAGAAAGGCTTAGATTCTTCTGTTGTCACGCATAATGATACAGTGGATGGTTCGAACGTGAATGTACGTGACACAGAATGGGAAGCATGGATTGATCCCATTTCTCCATTTGGCTATTCTGCTGCATCCATTTTCAATGAATGCACCCTTATTAGTGGAAGCTCATTGGATGCACCCCCACCAGCTGTGGCCTTGTCTGGACCCAACACCGAGCCAGAACTAGTTGAACTCGATTTGACCCAAGATGGAGGAGAGAGAAAAATTTCGACCCCGTTGGATTTTTCTATGCCTGATGCTTTATTTGATCCGAGTTGGTTTGACGAGAGTTCTGAATGTGCGATGGCTGATGTCTTAGCAACACTGTTTGACGATGATGATTTCTGCAGTAGTGATTTCAACAACATGGCTACTGGAGCTTCTACTTCAAGTGAAGGATGGGGGATTGACTCTATCCCATGGAATAACTTGCCTGCTATCTGTCAAATACCCGACCTTCCTTGA 1629 0.4647 MSNSINECEDEMRSEDQMDSAPIDEGSCGGGGIILKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHLRPNLKKGAFSADEEQLIIELHAKMGNKWARMAAQLPGRTDNEIKNFWNTRIKRRQRAGLPLYPPDVCSQALNESRQTQNTNELNIGDTRHHDLLQANNYEIPDVIFEDLNACQGVLSYAPALPHISAGSVLTQGMGSSQNYSFMPPAMHRHKRLRESETLFPGFNGNVTCGLPSLNHFQIDACEKLRQPLGFSFLDDPDPNRTSPPIFGVMPGSHALSNGNISASMPIHGAAKLELPSLQYPETDLVSWGMTPPFTPTGQVHSVGLSPPNSGMLDILLHESQTLNSTENKSSEKGLDSSVVTHNDTVDGSNVNVRDTEWEAWIDPISPFGYSAASIFNECTLISGSSLDAPPPAVALSGPNTEPELVELDLTQDGGERKISTPLDFSMPDALFDPSWFDESSECAMADVLATLFDDDDFCSSDFNNMATGASTSSEGWGIDSIPWNNLPAICQIPDLP* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01216 542 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 492 - -
Eupl13g01216 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Eupl13g01216 542 Pfam Myb-like DNA-binding domain 40 100 - -
Eupl13g01216 542 SMART sant 36 86 IPR001005 -
Eupl13g01216 542 SMART sant 89 137 IPR001005 -
Eupl13g01216 542 FunFam MYB-related transcription factor 36 89 - -
Eupl13g01216 542 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Eupl13g01216 542 CDD SANT 39 84 IPR001005 -
Eupl13g01216 542 CDD SANT 92 133 IPR001005 -
Eupl13g01216 542 FunFam Transcription factor MYB97 92 167 - -
Eupl13g01216 542 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Eupl13g01216 542 Gene3D - 36 89 - -
Eupl13g01216 542 Gene3D - 92 138 - -
Eupl13g01216 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Eupl13g01216 542 MobiDBLite consensus disorder prediction 1 23 - -
Eupl13g01216 542 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01216 Eupl-Chr13 21889708 21892120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01216 32 542 MYB Transcription Factor Family AT5G06100 40.260 2.87e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g01216 Myb_DNA-bind_6 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01216 K09422 - nnu:104604178 697.197