Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01208 ATGGTGAACGAGCTTCGAATTCTTGATCCTAACATCTGGAAGGCCTGCGCGGGAAGTTCAATTCAAATCCCGATTGTTGATTCTTGGGTTTACTACTTCCCCCAAGGTCACGCCGAGCAAGCCTTGTCTCCTCCTGATTTCTCATCGTCCATCTGTTTCAAACCCATGATTCTTTGTCGAGTCGACTCCATTCTTTTCCTCGCGAATCCTCACTCCGACGAGGTTTTTGCTAAGATCCGTCTCGAACCTTTTGATCGATATCGTGCAGGGATCTTCCGTACCTCGCCGACTCTGGGAATTTCGAACAGGGAGAACAATGACGGCGAGGAGAAGGTTCTTTCGTTCGCGAAGATCCTCACCTCGAGTGATGCAAACAATGGTGGAGGATTCTCGGTCCCGAGGTTTTGCGCTGAGTCGATCTTTCCGCTCCTGAATTTAAACGATTACCGGCCACTGCAGACGATTTCGTTGCGTGACGTTCATGGAGTGCTTTGGGATTTCCGCCACATCTACCGTGGGTCCCCAAAACGCCATCTCCTAACGACTGGATGGAGTAAGTTTGTGAACCAGAAGAAACTCATCGCTGGGGATTCTGTGATTTTCATGAAGAATCGGACTGGTGACCTATCTGTCGGCATCCGACGGTCGAAGAGGTCAAGCGTGACTGTGGATAGTCCACGGTGGAATTTGCAGATTGCCCTAGCGGCGAAATTGGAGCAGGAGTTGTGTAGCGGAGAGTCATTCTGGAGGAGTAACAGGGGTCGGAGTTCTGCTGAGTCAGTCAGGGAGGCTGCTGAACTAGCGGGAACCAACAGGCCTTTCGAGATTATCTATGATCCAAAGGCGGGGTTACTGGACTTTATGGTGGAAGCACAGACGGTTGAGGAATCATTGAGAACGTTTTGGAAGGCTGGGATGAGGGTTAAAATGTCAGTGGAGACGGAGGGCTCGTCTAGGATGACGTGGTTCCAGGGGACAGTTTCGTCCGCTGCAGGTCCAGATCACGGGCCATGGCATGGCTCTCCCTGGCGCATGCTTCAGGTTACTTGGGATGAGCCTGAAGTTTTGCAAAATATAAAGAGAGTGAGCCCTTGGCAAGTTGAATTGGTTGCAGGCACACCACCACATCAGACACCATTGCCCCCCACGAAGAAACCCAGAGTTTCCCAGAATCCTGAGTTGCTGACTGATGGAGAAGGGGGCATGTTCTTTCCCATGACGGGATTAACTAATTCAATGATGGGGCACTTGGACCCTTCATTGTTTAGTTATCCCACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGACTGGATCTTCTCCAGTTTTTCGAACTTTGTAGCTAATAGTACCCATCACATGTTGTACTCTGAACATCTCTATGGAGACATGGCACCAAAGTTGAGTTCAGTGTCTACCGAACTGAGCATTGGGAGTACACCACAATCCGACAACTCATTGCAGCATAGCCCGGGCAGTAGCACAGAGCTTCCTGGCAACCAAACCTGCAACTCAATGACCAAAGCTGGTGGTGCTTCATTTCGGTTATTTGGTAAGACCATCCAGATAAACCAGCCTGTTGCGGGTGGGTGCACAGAAGATGGTACTAAAGGTTACAAAGAGACTGAAGGCGTGACTAATCCACTTGAACCTTCCTTATCTTATCCTTACAAGAAGCTGTATAACAGTCTTGATGCTCAATGTCAAAGAGTCTCGGCATGTTCCTTGTGA 1731 0.4974 MVNELRILDPNIWKACAGSSIQIPIVDSWVYYFPQGHAEQALSPPDFSSSICFKPMILCRVDSILFLANPHSDEVFAKIRLEPFDRYRAGIFRTSPTLGISNRENNDGEEKVLSFAKILTSSDANNGGGFSVPRFCAESIFPLLNLNDYRPLQTISLRDVHGVLWDFRHIYRGSPKRHLLTTGWSKFVNQKKLIAGDSVIFMKNRTGDLSVGIRRSKRSSVTVDSPRWNLQIALAAKLEQELCSGESFWRSNRGRSSAESVREAAELAGTNRPFEIIYDPKAGLLDFMVEAQTVEESLRTFWKAGMRVKMSVETEGSSRMTWFQGTVSSAAGPDHGPWHGSPWRMLQVTWDEPEVLQNIKRVSPWQVELVAGTPPHQTPLPPTKKPRVSQNPELLTDGEGGMFFPMTGLTNSMMGHLDPSLFSYPTFPAGMQGARHDWIFSSFSNFVANSTHHMLYSEHLYGDMAPKLSSVSTELSIGSTPQSDNSLQHSPGSSTELPGNQTCNSMTKAGGASFRLFGKTIQINQPVAGGCTEDGTKGYKETEGVTNPLEPSLSYPYKKLYNSLDAQCQRVSACSL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01208 576 Gene3D - 112 216 IPR015300 -
Eupl13g01208 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl13g01208 576 FunFam Auxin response factor 113 217 - -
Eupl13g01208 576 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Eupl13g01208 576 SUPERFAMILY DNA-binding pseudobarrel domain 111 220 IPR015300 -
Eupl13g01208 576 Gene3D - 302 373 - -
Eupl13g01208 576 Pfam Auxin response factor 264 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl13g01208 576 SMART B3_2 115 217 IPR003340 GO:0003677
Eupl13g01208 576 MobiDBLite consensus disorder prediction 472 504 - -
Eupl13g01208 576 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Eupl13g01208 576 CDD B3_DNA 114 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01208 Eupl-Chr13 21682083 21687400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01208 6 543 B3 DNA Binding Superfamily AT1G77850 44.107 6.95e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl13g01208 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01208 - - nnu:104612061 738.799