Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01206 ATGGATAATGAAGAGACCAAACAGACAAATAAGAGGGTCCCTTTTACTCAACTCAGCCAGGTCGACTCCGATTTCGCCGTTGCAATGGCGTTGCAACAACAGGAAAGGGAATTCTTGATGCTTATGATGAGCGAAAGTGATACTGATGAATTCAACGATGAGAGTGAAGCTAGTAACGACGACGATGATGAATTTGATGAATTTCTTCAAGATGATGATGAAATCAACGCCGAATTAGAGGACCTGGAAGAAGAAGAGAGCAGCAATGATCAGGACATGGAGGACGACGATATCGATCCAGATGAGTTGTCTTATGAGGAGTTGATTGCACTGGGAGAGGTACTTGGAACAGAGAACAAAGGATTATCAGAAAATGAACTCGGTATCTACTTGCATCCCTACACGTTTAAGCGCCAATCCGAGTCCAAATACGGTTTCGATCAGTGTGTGATTTGTCAAGTCGAGTTCGAAGACGAAGAACCAGTAGTCGCACTTCCGTGCGAACACGCTTACCATTCTGAGTGTGTGAGTAAATGGCTTCAAATAAGTAAGGTTTGTCCGATATGTAGCACCGAGGTCTCTTCGTCTGCGCTCGCTAAGACTACTTAA 609 0.4417 MDNEETKQTNKRVPFTQLSQVDSDFAVAMALQQQEREFLMLMMSESDTDEFNDESEASNDDDDEFDEFLQDDDEINAELEDLEEEESSNDQDMEDDDIDPDELSYEELIALGEVLGTENKGLSENELGIYLHPYTFKRQSESKYGFDQCVICQVEFEDEEPVVALPCEHAYHSECVSKWLQISKVCPICSTEVSSSALAKTT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01206 202 Coils Coil 65 85 - -
Eupl13g01206 202 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 3 91 IPR043312 -
Eupl13g01206 202 SMART ring_2 149 189 IPR001841 -
Eupl13g01206 202 MobiDBLite consensus disorder prediction 40 99 - -
Eupl13g01206 202 MobiDBLite consensus disorder prediction 47 99 - -
Eupl13g01206 202 SUPERFAMILY RING/U-box 148 195 - -
Eupl13g01206 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 196 IPR013083 -
Eupl13g01206 202 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 196 - -
Eupl13g01206 202 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Eupl13g01206 202 Pfam Ring finger domain 147 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01206 Eupl-Chr13 21640845 21643379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01206 96 193 C3H Transcription Factor Family AT3G63530 49.495 1.92e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01206 K19045 - tcc:18592374 192.2