Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01189 ATGTCTTGCGGCACTGTTGTTCCCAAGGATTCCATGAAGAAGACAGAAAACTCAAAATATGAGGCACAGAACAACGAAAACAACCAACTGGTTTCATTTTTTAACCATAAAACAGGCGAGATGTCTATAAGGAACATGTCTCAAACCATTGACTTGTTCAGAAAATATCTTCTCATAAAATCTCAAAACACCATGAGCAAAACAAACGAGGAAGAATCAGAAGCTATCAAGAGATCTCCACCCTGCTGTTTAGTACCACCCAAAGTAGGTAGTAATTTACCTCGACATCCTTCTTTTCTGGAGCAACGGATACTCGCTGAACTCAGGGCCGATGCGGCACCACCAACTTTGTCGAACTATAAGTCTTCCAAGGCACAACTCACTATTTTCTACTCTGGGGCTATTCAAGTGTATGACAATGTTCCCATTGATAAGGCTCAAGCCATTATGCTCCTTGCTGGTAAAAGCTCTTTACCGAATTCTGAAGCCAAGATAAACCCAAAAGCACCCCTTCCTTGTGTGAGCTTACCATCCGTCTGTAACTTACAAGCAGGCCTTCCAATTGCAAGAAAGCATTCGTTACAGCGGTTTCTCGAGAAACGCCGTGAGAGGACAATAAACAAGTCTCCTTATGCTTCTACTCCCACTAGAAAGCGAGAATAG 663 0.4268 MSCGTVVPKDSMKKTENSKYEAQNNENNQLVSFFNHKTGEMSIRNMSQTIDLFRKYLLIKSQNTMSKTNEEESEAIKRSPPCCLVPPKVGSNLPRHPSFLEQRILAELRADAAPPTLSNYKSSKAQLTIFYSGAIQVYDNVPIDKAQAIMLLAGKSSLPNSEAKINPKAPLPCVSLPSVCNLQAGLPIARKHSLQRFLEKRRERTINKSPYASTPTRKRE* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01189 220 Pfam tify domain 122 154 IPR010399 -
Eupl13g01189 220 MobiDBLite consensus disorder prediction 1 23 - -
Eupl13g01189 220 ProSiteProfiles Tify domain profile. 120 155 IPR010399 -
Eupl13g01189 220 Pfam Jas motif 187 211 IPR018467 -
Eupl13g01189 220 SMART tify_2 120 155 IPR010399 -
Eupl13g01189 220 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 41 215 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01189 Eupl-Chr13 21158691 21164203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01189 126 220 Tify Gene Family AT5G20900 36.752 6.42e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Eupl13g01189 tify 9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01189 K13464 - msin:131234529 176.792