Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01175 ATGCAAGACACAGACGAGGAGCTTTTGGACCTTCGTCTTGCCATTGTCAGTGGTTCCAATGGTGAGAAGAAGAGGAAGAGAAGGAGTAGTTTGAATCCTCTAACTTTACATGAAGGATATGAAGGGAAGATATATGGGCTCCTTCAGATGAGGGAACAAATGTTAAAACTAGATCCCATGAGACAAGGGGTGGTAGAAGATGGAAAGGGTCTTCATTTGATCCATTTGTTGCTTATCTCTGCTACTGCAATCGACGAGAACAACATTGATTCGTTTATTGAGAATTTGTTTGAGTTATACCAAAATGTTTCACTCACTGGTGATTCTGTGCAAAGGGTTGCAGCTTATTTCGCCGACGGATTGGCTGCGAGGCTTCTCACTCGAAAATCTCCCTTCTATGACATGATCATGAAGAACCCCACACCAGAAGAAGAGTTCTTGGCCTTCACCGAGATCTATCGGGCGTCTCCATACTACCAATTTGCTCATTTTACAGCAAACCAGGCAATCATTGAGGCGTTCGAAGAGGAGGAAGAGCATAACAACAGAACTTTGCATGTTATCGATTTCGACATCTCATACGGGTTCCAGTGGCCTTCTCTAATACAATCTCTTTCGGAAAAGGCAACCAGCGATGATCGAATAATCTCTCTTCGAATTACAGGGTTTGGTAGAAGCTTGGAGGAACTGGTAGAAACTGAGACTAGATTAGTGAACTTCGCAAAGGGTTGTCGCAATTTAACATTTGAATTTCAAGGGCTATTAAGAGGTTCAAAAACTGTTACTCTGAGGAAAAAGAAAACCGAAACACTTGTTGTGAACTTAGTATTTTATCTACATACCTTGACAAACTCTTTGCAGATTTCTGATACATTGAAGTCAGTATATTCACTTAATCCTTCTATTGTAATCTTGGTGGAACAAGAAGGTACTCGAAGTCCAAGAAGCTTCTTATCAAGATTTATGGAGTCTCTACATTATTTTGCAGCCATGTTTGATTCATTGGATGATTGCCTTCCACCAGAGAGCGCCGAGAGATTGAGCATCGAGAAGAACCATCTTGGTAAAGAGATCAAGAGAACAATGAACTATGAGAAGGATGAGAACTATTATCAAAGGTATGAGAGGTTGGAGACATGGAAAGGAAGGATGGGGAGTCATGGGTTTGGGGGAATTAAACTAAGTTCGAAATCTATAATTCAAGCCAAGCTTCTTTTGAAAATTAGAAGCCATTGTTCTCACTTGGAATTTGATGGAGGGTGTGGTGGGTTTAAAGTTTTTGAGAAGGATGAAGGGTTGGCACTTTCTCTTGGGTGGCAAGATAGAAATCTAATAACAGCATCTGTGTGGAAATGTGTATGA 1362 0.409 MQDTDEELLDLRLAIVSGSNGEKKRKRRSSLNPLTLHEGYEGKIYGLLQMREQMLKLDPMRQGVVEDGKGLHLIHLLLISATAIDENNIDSFIENLFELYQNVSLTGDSVQRVAAYFADGLAARLLTRKSPFYDMIMKNPTPEEEFLAFTEIYRASPYYQFAHFTANQAIIEAFEEEEEHNNRTLHVIDFDISYGFQWPSLIQSLSEKATSDDRIISLRITGFGRSLEELVETETRLVNFAKGCRNLTFEFQGLLRGSKTVTLRKKKTETLVVNLVFYLHTLTNSLQISDTLKSVYSLNPSIVILVEQEGTRSPRSFLSRFMESLHYFAAMFDSLDDCLPPESAERLSIEKNHLGKEIKRTMNYEKDENYYQRYERLETWKGRMGSHGFGGIKLSSKSIIQAKLLLKIRSHCSHLEFDGGCGGFKVFEKDEGLALSLGWQDRNLITASVWKCV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01175 453 ProSiteProfiles GRAS family profile. 64 451 IPR005202 -
Eupl13g01175 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 447 IPR005202 -
Eupl13g01175 453 Pfam GRAS domain family 73 451 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01175 Eupl-Chr13 20525101 20526462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01175 76 451 GRAS Transcription Factor Family AT2G04890 34.286 1.35e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Eupl13g01175 GRAS 4.4e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01175 - - vvi:100242818 641.728