Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01171 ATGGATCTTAAAGGAAAGCTTTGTCCAGAAACCTGGGCAAAGTCTTCTCTGGGGAATGACTCGTCAAAAAGTTTCGCCACGGATCATCAAGCATTCACTCATTTCGATTTACAGCAACCTAACCGGAAGTGGGACGACCCTGCTAGTCTTGGTTATGATGGCATTAGGATTGAACCTTCATACTCCAAATTCAATCAGCCTTCCATTCCCTTGTCTTCTCATCCCTGCAACCCCAATAATCAGATCAAAACACCAGATCAAATAGATAATCGAACGACAGAGACCCTTGTTGATGCTACGAAACTCCAAGATTGGGATCCAAGAGCCATGTTGTCAAACCTCTCTTTCCTTGAGCAGAAGATCCACCAACTCCAGGATTTGGTACATTTGATTGTTGGCCAGAAAGGTCGAGGTTTGGGTCGACCCGATGAGCTTGTGGCTCAGCAGCAGCAACTTGTGTCTGCTGACCTCACTTCCATCATAGTTCAGTTGATCTCGACTGCAGGTAGTCTTCTTCCATCTGTAAAGAACACCCTCTCAGTGGAAAATCCTTTTGTTCGGCAACTAGGCAGTATCTCTGGGGTTGGATGTCCTCCTGGCTTAGTCATGAATGATGCTTTGCAACAAAACAATAGTGGGAGCAAGGTTTTTGAGCATTCTGATCAGACTGAACTGATGGGCAATTGCGGGCCTGAACAAAACTATGGAAGCAAACCTAACCTGGCTATCTCCACCATTGAAGACCATGAATCTAAGGATGACGAAGATGCTGGGGAAGGAGAGAACCTCCCTCCTGGTTCCTATGAAGTCTTACAACTAGAAAAAGAAGAAATTCTGGCACCACACACCCACTTCTGTTTGATCTGTGGGAAGGGATTCAAGAGGGATGCTAACTTAAGGATGCACATGAGAGGACATGGGGATGAATACAAGACCGCAGCTGCCCTCGCGAAGCCTAACAAAGACTCAAGCACAGAACCAATGCTCATAAAAAGGTACTCTTGTCCCTACATGGGCTGCAAGCGCAATAAGGATCACAAGAAATTCCAGCCACTGAAGACCATCCTGTGTGTGAAGAACCATTACAAACGTACCCACTGTGACAAGAGCTACACCTGCAGCAGATGCAACAGCAAGAAGTTCTCTGTTATTGCTGATCTCAAGACTCATGAAAAGCACTGCGGTCGAGACAAGTGGTTGTGCTCCTGTGGCACAACCTTCTCGAGAAAAGACAAGCTTTTTGGGCATGTTGCTCTATTCCAAGGCCACACTCCTGCCCTTCCATTAGATGAAACTAAAGGATCGTCAGGGGCATTGGATGGAGAGGAAAGCAGTGAAGCAACAACTAAGGTTGGAAGTACAGGATTCAACTTCAGCTCAAATACCTCCTGTGGAAGTGGTGTTCAGAATGTTGTAGATGTGAAAGGTGGCGTTGATGATCCAATCGGTTATTTCTCCCCGATGAACTTCGATGCATGTAACTTTGGTGGGTTTCATGAGTTCCCTCGACCACCTTTTGAAGCCCCAGAAAGCTCGCTGTCCTTCCTTCTTTCTGGATCTTGTAATTACGTTCAGAGAACTGGAGGGGCGTCAGGCGATGCCTTTGCTCATAAGACAATGAAGGATAAAATATTATTAGAAGACTACTAG 1650 0.46 MDLKGKLCPETWAKSSLGNDSSKSFATDHQAFTHFDLQQPNRKWDDPASLGYDGIRIEPSYSKFNQPSIPLSSHPCNPNNQIKTPDQIDNRTTETLVDATKLQDWDPRAMLSNLSFLEQKIHQLQDLVHLIVGQKGRGLGRPDELVAQQQQLVSADLTSIIVQLISTAGSLLPSVKNTLSVENPFVRQLGSISGVGCPPGLVMNDALQQNNSGSKVFEHSDQTELMGNCGPEQNYGSKPNLAISTIEDHESKDDEDAGEGENLPPGSYEVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKDSSTEPMLIKRYSCPYMGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNSKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPLDETKGSSGALDGEESSEATTKVGSTGFNFSSNTSCGSGVQNVVDVKGGVDDPIGYFSPMNFDACNFGGFHEFPRPPFEAPESSLSFLLSGSCNYVQRTGGASGDAFAHKTMKDKILLEDY* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01171 549 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 94 503 IPR044300 GO:0010044|GO:0010447
Eupl13g01171 549 SUPERFAMILY beta-beta-alpha zinc fingers 282 310 IPR036236 -
Eupl13g01171 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 311 IPR013087 -
Eupl13g01171 549 Gene3D Classic Zinc Finger 269 336 - -
Eupl13g01171 549 SMART c2h2final6 333 366 IPR013087 -
Eupl13g01171 549 SMART c2h2final6 284 306 IPR013087 -
Eupl13g01171 549 SMART c2h2final6 371 393 IPR013087 -
Eupl13g01171 549 MobiDBLite consensus disorder prediction 430 451 - -
Eupl13g01171 549 MobiDBLite consensus disorder prediction 212 239 - -
Eupl13g01171 549 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01171 Eupl-Chr13 20451742 20454933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01171 252 531 C2H2 Transcription Factor Family AT1G34370 70.629 1.54e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g01171 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01171 - - nnu:104596750 812.757