Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01151 ATGGCGCTGAGGATTTTGAAGAGCCGACTGTTTAGAGCGGAGCAAGTTGTTTTGTTCATTTTTCTTTCTCTACTGGTTGAATCGGCGACTGCGAATGTAGTTTTGATGGGGAACAATGTCACTTTATCGTTTAATGACATTGAAGCTAATTTCGCTCCGTCGGTTAAAGGATCTGGTGAACGGGGGATCTTGTATTTGGCTGAACCTATTGATGCTTGCTCGCCGCTGACTAATAAAGTCGATTCAGCTGTAAATTCTCCATTTGCGATGATAATTAGAGGAGGATGTACGTTTGAGGATAAAGTTAGACAAGCGCAGATTGCAGGGTTCAAAGCAGCTATTGTGTATGACAATGATAATAATGATGCTTTGGTTGCAATGGCAGGAAGTTCGGCGGGTATCAAAATACATGCCGTGTTCATCTCCAAAGCCTCGGGCGAAGCACTTAAAAAATATGTTGGTCTTACAGACATGGAGCTGTGGATTATCCCAACCTTTGAAAACTCAGCATGGTCAATCATGGCCATTTCGTTCATATCCCTACTTGCCATGTCTGCTGTGCTTGCCACTTGTTTCTTCGTTCGCAGACACCGTATAAGACGAGAACGGCCTCGAGCTTCTCGTGTTCGAGAGTTTCATGGGATGAGCAGCCGTTTAGTGAAAGCGATGCCGAGCCTGATATTTACAGCAGTTTTAGAAGATAATTGCACTTCAATGACGTGTGCGATATGTCTTGAAGACTATTGTGTTGGAGAGAGGCTCAGAGTACTGCCATGTCGTCACAAGTTTCATGCTGTTTGTGTGGATTCTTGGCTTACTACATGGAGGACATTTTGCCCAGTTTGCAAACGTGATGCGAGGACAAGCACTGGTGATCCTCCAGCATCTGAGTGCACTCCATTACTTTCATCAGACCCTGCCTCTCCGTCTTCCTCTGCTGGTTTGTCATCTGTTCGATCGTCGTTGGCAGCATCGTCAGCCATACTAATAGCCCCGGCATCGTCACGATCCCCATCAGTTTCTCTTGGTCACTCCCTCACTAGCACTCCTTATGTGCCTCAGTCTCTTAGGTCTTACAGCAACTCTCCTACCTTAAGTCTAAGCAGAAGCTCTGTAGACCTGAGAAATGCATCTTCCCAGAGATCTTATGCCTCCCACCTAGTTTCATCTCACTCCTTGGGCTACCCATCCTTATCACCACTTAATTCAAGATACATATCCCCATATGTTCCTAGTTCAAGCAACGCTTCTCCAAATTATGTTGGGTCGTCCAGTCGGCAGCCATACTTGCGGCATTGTAGTGAATCAGCAGCAAGTCTCTCTCCTTTTGCTTCTGCTCAATCTCTTCCTGGTTGTTGA 1359 0.4584 MALRILKSRLFRAEQVVLFIFLSLLVESATANVVLMGNNVTLSFNDIEANFAPSVKGSGERGILYLAEPIDACSPLTNKVDSAVNSPFAMIIRGGCTFEDKVRQAQIAGFKAAIVYDNDNNDALVAMAGSSAGIKIHAVFISKASGEALKKYVGLTDMELWIIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSMTCAICLEDYCVGERLRVLPCRHKFHAVCVDSWLTTWRTFCPVCKRDARTSTGDPPASECTPLLSSDPASPSSSAGLSSVRSSLAASSAILIAPASSRSPSVSLGHSLTSTPYVPQSLRSYSNSPTLSLSRSSVDLRNASSQRSYASHLVSSHSLGYPSLSPLNSRYISPYVPSSSNASPNYVGSSSRQPYLRHCSESAASLSPFASAQSLPGC* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01151 452 MobiDBLite consensus disorder prediction 286 312 - -
Eupl13g01151 452 MobiDBLite consensus disorder prediction 292 312 - -
Eupl13g01151 452 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 31 163 - -
Eupl13g01151 452 CDD PA_C_RZF_like 21 170 IPR044744 -
Eupl13g01151 452 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 201 288 - -
Eupl13g01151 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 288 IPR013083 -
Eupl13g01151 452 SMART ring_2 241 282 IPR001841 -
Eupl13g01151 452 SUPERFAMILY PA domain 83 153 IPR046450 -
Eupl13g01151 452 Gene3D - 26 159 - -
Eupl13g01151 452 SUPERFAMILY RING/U-box 234 297 - -
Eupl13g01151 452 Pfam PA domain 82 149 IPR003137 -
Eupl13g01151 452 ProSiteProfiles Zinc finger RING-type profile. 241 283 IPR001841 -
Eupl13g01151 452 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 165 297 - -
Eupl13g01151 452 Pfam Ring finger domain 240 283 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01151 Eupl-Chr13 19722197 19737683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01151 31 450 C3H Transcription Factor Family AT1G22670 48.037 1.41e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01151 K15692 - mnt:21390268 617.846