Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01142 ATGGAGCTGCAGACGAACCACCATCTATTCGAGAAACGCCCAATTCTCAAGTCTAAAACTCCTGCCGTCAAATGGTTCAAGGAATGGGTGCCCCAAGATGTTGTGTCAACTGGTGGGAAGTGCTTCCTTATGAAATGGGTCACAGAGGACACATTGAAGGCGTTGAAAGACAAGTATAAAGAGCCAGAGCAAGAAGAGCCGGAACCAGAACCAAGTACAGAAGTTCTTTTCCTTTGCAGCTACGAAGGCTGTGGTAAGACTTTTATTGATGCTGGGGCTTTGAGGAAGCATTCTCACATCCATGGGGAGAGACAATATGTTTGTCATTATGAGGGATGCGGAAGGAAATTCTTGGATAGCTCCAAGTTGAAAAGACACTTTCTTATTCACACAGGCGAGAGGCATTTTGTATGTCCTCATGAAGGCTGTGGTAAGGCTTTCTCTCTTGATTTCAACTTAAGGGCACACATGCGAACACATTCGCAAGAGAACTATCATATTTGCCCATATGTAGATTGTGGAAAGAGGTACGCTCATGAGTACAAGTTAAAAACACACATCAAGGCTCACCATGAAAAGAACATGGCGATGGATATAATAAAACAAACTCCGCCTTCAGAGAAGCTACCAGCCGCTCCAAAGCCTCCTGCTGTGGTTTATGGCTCTGCTTCCTCTGACCGCCCTTACGCCTGCCCTTATGAAGGATGCGATAAATCCTACATTCATGAGTATAAGTTGAACCTCCATTTGAAAAGAGAGCATCCTGGTCATAACCCAGAAGAGAATGGCAAGCACGCTGCTGAAATCGATAATGACATGGATGAAGGCAGTGACTTAGATGCTTATGCTGGAAAAAGTGGCAATGGCAAGAATCCTAAACGAAGCAAACCCAAGCCGATGTCGAAAATGCCACCATCAAAAATTGTACAGCGGAAAGGTTCTAGTGTGGCTCCTACTAATATGAATATAATGAAAAAACAGTGGACAAGCAAAGACACATGCGAGGAAGAAGATAGCGAGGAAACAGAAGAGGATCGTGAAAATCTTGAGGATGGATGGAGATACATAGAAAACGAGGATGATGAAGAGACAGAGTACGAGGATTAA 1107 0.4408 MELQTNHHLFEKRPILKSKTPAVKWFKEWVPQDVVSTGGKCFLMKWVTEDTLKALKDKYKEPEQEEPEPEPSTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGRKFLDSSKLKRHFLIHTGERHFVCPHEGCGKAFSLDFNLRAHMRTHSQENYHICPYVDCGKRYAHEYKLKTHIKAHHEKNMAMDIIKQTPPSEKLPAAPKPPAVVYGSASSDRPYACPYEGCDKSYIHEYKLNLHLKREHPGHNPEENGKHAAEIDNDMDEGSDLDAYAGKSGNGKNPKRSKPKPMSKMPPSKIVQRKGSSVAPTNMNIMKKQWTSKDTCEEEDSEETEEDRENLEDGWRYIENEDDEETEYED* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01142 368 Gene3D Classic Zinc Finger 214 270 - -
Eupl13g01142 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Eupl13g01142 368 MobiDBLite consensus disorder prediction 270 368 - -
Eupl13g01142 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Eupl13g01142 368 FunFam zinc finger transcription factor YY1 77 102 - -
Eupl13g01142 368 FunFam Putative zinc finger protein 143 103 133 - -
Eupl13g01142 368 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Eupl13g01142 368 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 13 345 - -
Eupl13g01142 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Eupl13g01142 368 Pfam Zinc finger, C2H2 type 229 254 IPR013087 -
Eupl13g01142 368 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Eupl13g01142 368 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Eupl13g01142 368 FunFam Zinc finger protein 410 134 161 - -
Eupl13g01142 368 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Eupl13g01142 368 SMART c2h2final6 106 130 IPR013087 -
Eupl13g01142 368 SMART c2h2final6 229 254 IPR013087 -
Eupl13g01142 368 SMART c2h2final6 136 160 IPR013087 -
Eupl13g01142 368 SMART c2h2final6 166 190 IPR013087 -
Eupl13g01142 368 SMART c2h2final6 77 101 IPR013087 -
Eupl13g01142 368 FunFam zinc finger transcription factor YY1 163 194 - -
Eupl13g01142 368 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Eupl13g01142 368 MobiDBLite consensus disorder prediction 312 328 - -
Eupl13g01142 368 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Eupl13g01142 368 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Eupl13g01142 368 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Eupl13g01142 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Eupl13g01142 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Eupl13g01142 368 Gene3D Classic Zinc Finger 134 161 - -
Eupl13g01142 368 Gene3D Classic Zinc Finger 77 102 - -
Eupl13g01142 368 Gene3D Classic Zinc Finger 163 195 - -
Eupl13g01142 368 Gene3D Classic Zinc Finger 103 133 - -
Eupl13g01142 368 MobiDBLite consensus disorder prediction 354 368 - -
Eupl13g01142 368 FunFam Zinc finger transcription factor YY1 204 271 - -
Eupl13g01142 368 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01142 10 355 C2H2 Transcription Factor Family AT4G06634 62.466 2.04e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g01142 zf-C2H2 0.0085 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01142 - - nnu:104589419 611.683