Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01141 ATGGGCCGTTCTCCTTGCTGCGAGAAAGCCCACACAAACAAAGGAGCATGGACCAAAGAAGAAGACCAGCTCCTCATCAACTACATCAGAGCTCATGGCGAAGGCTGTTGGAGATCTCTCCCCAAAGCTGCAGGTTTGCTTCGCTGTGGCAAGAGTTGCAGACTTCGATGGATAAACTATCTCCGTCCTGATCTCAAAAGAGGAAATTTCACAGATGAAGAAGACGAACTCATCATCAAACTCCACAGCTTACTTGGAAACAAATGGTCTCTTATTGCGGGACGCTTACCAGGAAGAACAGACAATGAGATCAAGAACTACTGGAACACACACATTAAACGAAAGCTGCTCAGCCGGGGACTCGATCCTCAAACCCATCAACCAATCACCACCACCACCACCACCAACACCACCACCAACAATAGCTGGAATGCCAATAACGCTGTTGTGGCGGAAGAGGCGCATAGTAGCAGCGGCACAACGGAGGAAGAACAACTGAAACAAGAACAACAACAATACCCAGAAGTCAATCTTGATCTTTCGATAAGTCTTCCCTTTCAGTCGTCTCAGCCAGCTTCGGCTAACACAGCTGAATCGAAACCACAACCAATCATCACTCAAGCTATATGTTTGTGTTGCCATTTAGGGCTACAGAGCAGTGAAGCCTGCAATTGCAAAGCTATCTCGGTGATGACCAATGGTTTCCATAGATATTACAGACCGTTGGATTCATAG 735 0.4707 MGRSPCCEKAHTNKGAWTKEEDQLLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGLDPQTHQPITTTTTTNTTTNNSWNANNAVVAEEAHSSSGTTEEEQLKQEQQQYPEVNLDLSISLPFQSSQPASANTAESKPQPIITQAICLCCHLGLQSSEACNCKAISVMTNGFHRYYRPLDS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01141 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl13g01141 244 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl13g01141 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl13g01141 244 CDD SANT 69 112 IPR001005 -
Eupl13g01141 244 Gene3D - 69 173 - -
Eupl13g01141 244 SMART sant 13 63 IPR001005 -
Eupl13g01141 244 SMART sant 66 114 IPR001005 -
Eupl13g01141 244 CDD SANT 16 61 IPR001005 -
Eupl13g01141 244 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Eupl13g01141 244 FunFam Myb transcription factor 11 67 - -
Eupl13g01141 244 MobiDBLite consensus disorder prediction 123 156 - -
Eupl13g01141 244 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl13g01141 244 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl13g01141 244 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl13g01141 244 Gene3D - 14 66 - -
Eupl13g01141 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Eupl13g01141 244 MobiDBLite consensus disorder prediction 122 172 - -
Eupl13g01141 244 FunFam Myb transcription factor 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01141 Eupl-Chr13 19370037 19371542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01141 1 235 MYB Transcription Factor Family AT4G38620 54.851 1.27e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g01141 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01141 K09422 - ming:122066430 364.385