Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01140 ATGGTAGGAAGGGAGGAGATGGAGTTTCGTTTTGTGCCGTGCGGTCGTCATATGGGGAGCAGCAACACCGATGAAGCGGACGCAAAAGCGGTTGAGAAGAACCAGCGGTTCACGGGTGAACCGGTAACAACAACAAACAACAAGAAGACTGCCGGGAAGGAGTTCAGGTACAGGGAGTGTATGAGGAACCATGCAGCATCGATTGGGGGCCACGCCAACGATGGCTGTGGGGAGTTTATGCCGGGAGAGGAGGATCTAAGGTGCGCCGCTTGCGGATGTCACCGCAATTTTCACCGAAAGGAGGTACCTGGTCATGGGGGGTGCGCAGGTTACCACCTCCACCTACCACCACCCCCACAAACCCCACAATCACCACCAGCTATGTTTCCGTACAACGTGGTGGGGTCCACTCCCAGGTGGGAAAAGAAGAAAATAGTAGGAACGTTCCCTTCTCTCTCAGCATTTTCACTACCACAACATCCTCACCTTCATCGTAGTGGTGATCAGATCTTTGGAGATGTTGATCTTCAGAATCAGAATGACAGTAAGGATGATCGACGATCAGAAACGCCGGAGGAGCGAAGAGAGGTAGTGGTGAGGAATAAGAGGTTTAGGACAAAGTTTACGCAGGAGCAGAAGGAGAAGATGATGGAGTTCGCAGAGAAGTTAGGGTGGCGGATACAGAAGCATGATTACGTGGCGATTAGCCAGTTCTGCTTGGAGCTTGGAGTCAAACGTCACGTCCTTAAAATCTGGATGCACAACAACAAGAACACACTTAGAAGGAAAGAAAAGGCACCGCCACAAGCGCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCAATCTCCACCACCCATCGGGGTGTGA 873 0.5235 MVGREEMEFRFVPCGRHMGSSNTDEADAKAVEKNQRFTGEPVTTTNNKKTAGKEFRYRECMRNHAASIGGHANDGCGEFMPGEEDLRCAACGCHRNFHRKEVPGHGGCAGYHLHLPPPPQTPQSPPAMFPYNVVGSTPRWEKKKIVGTFPSLSAFSLPQHPHLHRSGDQIFGDVDLQNQNDSKDDRRSETPEERREVVVRNKRFRTKFTQEQKEKMMEFAEKLGWRIQKHDYVAISQFCLELGVKRHVLKIWMHNNKNTLRRKEKAPPQAPPPPPPPPPPPPQSPPPIGV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01140 290 FunFam Zinc-finger homeodomain protein 2 188 262 - -
Eupl13g01140 290 Pfam ZF-HD protein dimerisation region 55 102 IPR006456 -
Eupl13g01140 290 MobiDBLite consensus disorder prediction 166 196 - -
Eupl13g01140 290 NCBIfam homeobox domain, ZF-HD class 202 258 IPR006455 -
Eupl13g01140 290 Gene3D - 180 261 - -
Eupl13g01140 290 SUPERFAMILY Homeodomain-like 198 262 IPR009057 -
Eupl13g01140 290 MobiDBLite consensus disorder prediction 266 290 - -
Eupl13g01140 290 MobiDBLite consensus disorder prediction 259 290 - -
Eupl13g01140 290 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 101 IPR006456 -
Eupl13g01140 290 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 260 - -
Eupl13g01140 290 MobiDBLite consensus disorder prediction 178 196 - -
Eupl13g01140 290 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 102 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01140 Eupl-Chr13 19337015 19337887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01140 54 260 ZF-HD Transcription Factor Family AT4G24660 46.083 1.15e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl13g01140 ZF-HD_dimer 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01140 - - nnu:104589415 242.276