Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01107 ATGACTAGGGGAAAGTTTCCAAGTGGGAGCAATTCGAGTAAAGATTCTAAATGCAATGAAAAATCTTCTAAATTCAATTGGTCACAACATGCCCATGCACATGATAGTTTCTCAGGTCAAAATAAGTTTTTGAGCTCAAATTTTCTTTTTTCCTTACCAACGCAAAGACCTCGTACTGAAGAAACACTAGGTGCAAGGTCAATGGCTTCTGCAATTGTAAATGGACAAAGGCTGCAGAGTCCACAAATAAAAAAGGCTTGGGAAGCTCTTTCTAGCCTTCAGATAACCCGCAGCCGCAGGAACTATTTAAAACCTGGAATAACTGCACCAGTCATTCAGAATATTAATGCAGACCACTTGCCGTCTAAGATGCTAGATTCTTCTCAAGATACCAGAAAAAAAACTACTTTATGGAGCTCATCTGACATGACTCCAAAATCTTCTGAAAGTTCAAGGCATGAAAATGTGCAAACGCATCAGAACTTCACTGATTCTGATGCCATAATGGGTGAATCTGTAATTTACACGAGCAATTCTTTACCAGAAAGCAGGTTGAGTGCTGCAGAAGCTGACAGAAGTGCAAACATGGGGTGGCCAAATGAGAGAAAAGCATCGATAATGTACAGTTCTCCAGCACACGTTGGAGATGGAGCTTCTAGTACACATTCTAACCAAAAGAAAGGGTTTGAGGAAGATTTTGCCGATGATATTGATGATGATGATATACTCAAGAATATTGACGTGGACCAAATAGTTCTTAAACACTTCCAATCAACTTGCACACCTCAATCATCAACGTCTAAGCTTCCACCTTTCACTCCAGTTATAAATAAAGATAATCCTACAAGACCTAATGAAAAGTGTTTGCCCCCGGAATTGTCAATGAAATGTAATCATGGCTTTAAGGTAGCACTTTGCCCAGGAGCTGCAATTCATTTGCAGGAGATGAAGGACATGCTAATTGCCATAGCAAACGAGCTTCTTGACAACACTGACCTCAGTCCAGTGCAAATAGAGAAGCTTCGCCAAGATAGGTTGCAGCTGAATAAGCAAATTCAGCAGCTTGAGAAATACCTTTTCTCTTTGTCAATGGATGATGAAAGACAGGAATCACATTTTTCAGCGTCCACAGCTGCTTCCAGGGGTTTTCAATTTGAGACTCCTCCAGTAGGTGCATTCAGGATTGATCCTGTGAGATTTGATGCCCAGGTCCATATACGTAATGAGCCAGAAAGCTGTGACAAGTGGGTTTCATCATCAGTATCATTCTCTTCTATAGACAGGTTTGGTATTCCAACCGGCCCTGTGGAAAGGGAGGAATATACTCCAAAGTTTGTTGAAGTTAATTACATTGAAGGATCAATTGATAAAAGGTGGAGTAGTGGTGACTTCCCATGGACCAAGAAGCTGGAGGCCAATAACAAGAAAGTGTTTGGAAACCCTTCCTTTCGTCCCAATCAAAGAGAGGTTATCAATGCAACAATGAGTGGATATGATGTTTTTGTGTTGATGCCGACTGGAGGTGGAAAGAGCCTGACATACCAGCTTCCTGCTCTTATATGTCCAGGAATAACCTTGGTAGTTTCGCCACTTGTTTCACTCATTCAAGATCAAATTATGCATTTGTTGCAGGCAAACATCCCTGCTGCTTACTTGAGCGCCAGTATGGAGTGGAATGAACAACAGGAGATATTTAGGGAACTGAGTTCAGGTTGCTGTAGATACAAGTTGTTATATGTCACACCAGAGAAAGTTGCTAAAAGTGATGTTCTGTTGAGACAGTTGGAGAGTTTGCATGCTCGCGAATTACTTTCTAGGATTGTTGTTGATGAAGCTCATTGTGTAAGCCAATGGGGACATGATTTCAGACCAGATTACCAGGGTCTTGGTATTTTGAAACAAAAGTTCCCAAATACTCCAGTGTTGGCTTTAACTGCTACTGCAACAGCAAGTGTAAAGGAAGATGTTGTGCAAGCTCTCGGTCTTGTTAATTGCATTGTCTTCCGACAAAGTTTCAATCGCCCAAATTTGTGGTACTCCATAATCCCCAAGACAAAAAAGTGTGTGGATGACATCGATAGATTCATTAAGGAAAACCATTTTGATGAATGTGGCATTATTTATTGCCTTTCAAGAATGGACTGTGAGAAAGTAGCTGAAAAGTTGCAGGAATGTGGGCACAAAGCATCATTTTACCATGGTAGCATGGATCCTCAACAACGAGCATTTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATATGTGCCACAGTAGCTTTTGGAATGGGTATCAACAAACCCGACGTTCGGTTTGTCATCCATCATTCTCTGCCAAAATCTATTGAAGGTTACCATCAGGAGTGCGGTCGTGCTGGTAGAGATGGTCAGCGCTCATCTTGTGTGTTATATTACAGTTACAGTGATTATATTCGAGTCAAGCATATGATTAGCCAAGGAGTATTAGAGCAAAGTCCCGTTGCATCTGGATCAAGACGTACTTCTGTGGCAGGTTCAGGGAGGATATTAGAAACAAATATTGAAAATCTTTTGCGTATGGTTAGTTATTGTGAAAATGATGTTGATTGCCGACGTCTCTTACAGCTTGTTCATTTTGGAGAAAAATTTGATCCTGCAAACTGTGGCAAAACTTGTGACAATTGTTCCAAGACTATAAGTTATACTGACAAGGATGTCACTGACACAGCAAAGCAATTGGTTGAATTAGTGAAGTCAGCAGGGCAGCAGTATTCATCATCTCATATCCTGGAAGTCTATAGGGGTTCCTTGAGCCAACAAGTTAAGAAGTACAGACATGACTGCTTGAGCCTTCATGGAGCTGGAAAACATCTAGCCAAGGGTGAAGCTTCGCGAATTTTGCGCCATCTTGTTATTGAGGATTTTCTTCTGGAGGATGTTAAGAAAAGTGATATTTATGGATCTGTATCATCAGTGTTGAAGGTAAATGAATCTAAGGCGTACAATCTTTGCTATAGTGGACAGAAAGTTATTTTAAGGTTCCCTGCCTCCACAAAAGCAGCTAGGCTGAGCAAACCCGACATGACACCGGCAAAAGGTCCATTGTTGTCATTAAAGATTAGCCCCCCACAAAACGATACTCCTGCCCAACCTGAATATGAAGTAGACTTGAATCTCTCAGCAAAACTTTATGCTGCTTTGCGAATGCTTCGAACTGTTCTTGTGAAAGAAGCTGGTGAGGGGGTCATGGCATACCACATATTTGGAAATGCCACCTTGCAGCAGATCAGCAAGAAAATTCCCAGAACAAGAGAAGAACTTCTTGAGATCAATGGCATCGGCAAGGCAAAGATAAACAAGTATGGAGATCGGGTATTGGAAGCCATTGAATCTACCATTGAGGAGTACTATAAGACAGACAAGACTAGCAGCGGCAGTAATGATGCAACCAAGAGGAGGAGAGGCTCAAAGGGGATTTTGCATTCGGATTCAAGAGAGGATGATGACTTCACTGAGAGTACAGGTTTATCGAAGAAAAGGGCTACGAAGGAGGGGTTGAAAAGAAGTGCCGAGCTTAATGATTCTCGAATGCCAAACCATGATGAACGATGCATAGATATTGATCTAGATTCAGATGACTCAAAAAACGATATGGACGTCAAGGGCTCGGACTTGAAGGCTGATCGGAGTGTTGCAGGCAGAGTGTTACCTTCATGGTCAACACCAGGAAACAAGGGTTATAGTCAAGGTCGTAATTTGTTCCAGGAGTATGCCTTCGAAGGGTAG 3768 0.4167 MTRGKFPSGSNSSKDSKCNEKSSKFNWSQHAHAHDSFSGQNKFLSSNFLFSLPTQRPRTEETLGARSMASAIVNGQRLQSPQIKKAWEALSSLQITRSRRNYLKPGITAPVIQNINADHLPSKMLDSSQDTRKKTTLWSSSDMTPKSSESSRHENVQTHQNFTDSDAIMGESVIYTSNSLPESRLSAAEADRSANMGWPNERKASIMYSSPAHVGDGASSTHSNQKKGFEEDFADDIDDDDILKNIDVDQIVLKHFQSTCTPQSSTSKLPPFTPVINKDNPTRPNEKCLPPELSMKCNHGFKVALCPGAAIHLQEMKDMLIAIANELLDNTDLSPVQIEKLRQDRLQLNKQIQQLEKYLFSLSMDDERQESHFSASTAASRGFQFETPPVGAFRIDPVRFDAQVHIRNEPESCDKWVSSSVSFSSIDRFGIPTGPVEREEYTPKFVEVNYIEGSIDKRWSSGDFPWTKKLEANNKKVFGNPSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLSASMEWNEQQEIFRELSSGCCRYKLLYVTPEKVAKSDVLLRQLESLHARELLSRIVVDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSIIPKTKKCVDDIDRFIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKASFYHGSMDPQQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVLEQSPVASGSRRTSVAGSGRILETNIENLLRMVSYCENDVDCRRLLQLVHFGEKFDPANCGKTCDNCSKTISYTDKDVTDTAKQLVELVKSAGQQYSSSHILEVYRGSLSQQVKKYRHDCLSLHGAGKHLAKGEASRILRHLVIEDFLLEDVKKSDIYGSVSSVLKVNESKAYNLCYSGQKVILRFPASTKAARLSKPDMTPAKGPLLSLKISPPQNDTPAQPEYEVDLNLSAKLYAALRMLRTVLVKEAGEGVMAYHIFGNATLQQISKKIPRTREELLEINGIGKAKINKYGDRVLEAIESTIEEYYKTDKTSSGSNDATKRRRGSKGILHSDSREDDDFTESTGLSKKRATKEGLKRSAELNDSRMPNHDERCIDIDLDSDDSKNDMDVKGSDLKADRSVAGRVLPSWSTPGNKGYSQGRNLFQEYAFEG* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01107 1255 FunFam Bloom syndrome, RecQ helicase 674 894 - -
Eupl13g01107 1255 Coils Coil 338 358 - -
Eupl13g01107 1255 Gene3D HRDC domain 1050 1139 IPR044876 -
Eupl13g01107 1255 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 605 614 IPR002464 -
Eupl13g01107 1255 Pfam Helicase conserved C-terminal domain 691 796 IPR001650 -
Eupl13g01107 1255 Gene3D - 674 893 IPR027417 -
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 131 146 - -
Eupl13g01107 1255 Pfam RecQ zinc-binding 808 889 IPR032284 -
Eupl13g01107 1255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 666 IPR014001 -
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 1133 1216 - -
Eupl13g01107 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 815 IPR027417 -
Eupl13g01107 1255 SMART hrdc7 1051 1133 IPR002121 GO:0003676
Eupl13g01107 1255 Pfam DEAD/DEAH box helicase 485 653 IPR011545 GO:0003676|GO:0005524
Eupl13g01107 1255 Pfam HRDC domain 1055 1123 IPR002121 GO:0003676
Eupl13g01107 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 942 IPR027417 -
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 120 164 - -
Eupl13g01107 1255 PANTHER DNA HELICASE RECQ FAMILY MEMBER 456 1141 - -
Eupl13g01107 1255 NCBIfam RecQ family ATP-dependent DNA helicase 475 950 IPR004589 GO:0004386|GO:0006310
Eupl13g01107 1255 SMART helicmild6 716 797 IPR001650 -
Eupl13g01107 1255 SMART RQC_2 899 1010 IPR018982 GO:0006260|GO:0006281|GO:0043138
Eupl13g01107 1255 FunFam ATP-dependent DNA helicase RecQ 456 673 - -
Eupl13g01107 1255 CDD DEXHc_RecQ 471 673 - -
Eupl13g01107 1255 ProSiteProfiles Rhodanese domain profile. 706 747 IPR001763 -
Eupl13g01107 1255 Gene3D - 897 1007 IPR036388 -
Eupl13g01107 1255 CDD SF2_C_RecQ 674 806 - -
Eupl13g01107 1255 Pfam RQC domain 896 1013 IPR018982 GO:0006260|GO:0006281|GO:0043138
Eupl13g01107 1255 SUPERFAMILY HRDC-like 1054 1127 IPR010997 GO:0000166|GO:0044237
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 1139 1216 - -
Eupl13g01107 1255 ProSiteProfiles HRDC domain profile. 1051 1133 IPR002121 GO:0003676
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 263 283 - -
Eupl13g01107 1255 Gene3D - 447 673 IPR027417 -
Eupl13g01107 1255 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 834 IPR001650 -
Eupl13g01107 1255 SMART ultradead3 479 682 IPR014001 -
Eupl13g01107 1255 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01107 Eupl-Chr13 17830978 17866830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01107 705 820 Eukaryotic Initiation Factors Gene Family AT3G19760 25.862 9.70e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01107 K10901 - msin:131235615 1721.44