Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01104 ATGGCGAAACCCGGTCGAGTTAAACTGGCCACGCCGTCTGGTTCTTCATCTCCGTCCCGGTCCTCTTCAGGTTCGGATTCTCGCTCTCGTTCGCGCTCCCGCTCCAAATCCTTGTCCTCGTCTTCCTCTCCTTCCCGGAGCGCCAGTTCTCGCAGCCAAAGCCCTCCTACGCAGCGAAGAAGCCCTATAAGAGCAGCTAGGCGAGGTCGCTCCCCACCATCGTCTACTAAACAGGCTTCACCACCTCCTAGGAAACCGTCTCCGGTTCTTGAGTCCGTGGTCCTTCACATTGATCAGCTCACGAGGAATGTGAATGAAGGCCATTTAAAAGAGATATTCAGTAACTACGGTGAAGTTGTTAATGTGGAGCTGACAATGGATCGTAGTGTTAATCTTCCACGGGGGTATGGATATGTTGAGTTTAAGACGAGAGCTGATGCAGAAAAAGCCCTTCTTCACATGGATGGCGCGCAAATTGATGGGAGTGTTATTCGAGCAAGGTTCACCTTACCCCCGCGCCAGAAGGTTTCATCGCCTCCAAAAGCTGTTCCCGCTGCTCCAAAAAGAGAAGCTCCCCCAAAAGACAATGTTGGTGCTGATGTTGAAAAGGATGGCCAACAACGACAAAGAGATTCTTCTCCGCGTCGGAAGCCTCTTTCACCACCGCGAAGGAGATCTCCTGTAGCTCCCCGAAGAGGCGATTCTCCTCGACGGCGGCCTGATTCTCCTCAACGGCGACGCGTGGAATCCCCTGTTCGTCGTCGAGTGGGATCTCCTTATCGCCGTGGAGAAACTCCTCCCAGGAGGAGGCCGGCATCGCCAGCTAGAAGACGTTCTCCATCACCCCCTCCTCGGCGGCATAGATCGCCTGCACGGACTTCTCCACGAAGGGTGCGTGGTAGTCCAGTCCGCAAACGTTCGCCCATGCCACTGAGGCGTCGTTCTCCCCCTAGACGACCACGTAGTCCTCCTAGAAGGTCACCTATCAGTCGTCGACGTAGCCGCTCTCCTGTTCGCAGGCCTGCTCGTTCGCGTTCAAGATCAGTTTCTCCTCGCAGGGGTCGAGCACCAGGTCAAAGACGTGGGAGGTCCTCATCCTATTCTGGATCACCCAGTCCTCGCAAGCAGGGAGTCAGGAAGATTTCAAGGAGTCGTAGTCCAAGAAGGCCTGGGAGAGGAAGAAGCAGTAGCAACAGCCGCAGTAGCAGCAGCTCCCTTTCTCCAAAACCATAA 1233 0.5515 MAKPGRVKLATPSGSSSPSRSSSGSDSRSRSRSRSKSLSSSSSPSRSASSRSQSPPTQRRSPIRAARRGRSPPSSTKQASPPPRKPSPVLESVVLHIDQLTRNVNEGHLKEIFSNYGEVVNVELTMDRSVNLPRGYGYVEFKTRADAEKALLHMDGAQIDGSVIRARFTLPPRQKVSSPPKAVPAAPKREAPPKDNVGADVEKDGQQRQRDSSPRRKPLSPPRRRSPVAPRRGDSPRRRPDSPQRRRVESPVRRRVGSPYRRGETPPRRRPASPARRRSPSPPPRRHRSPARTSPRRVRGSPVRKRSPMPLRRRSPPRRPRSPPRRSPISRRRSRSPVRRPARSRSRSVSPRRGRAPGQRRGRSSSYSGSPSPRKQGVRKISRSRSPRRPGRGRSSSNSRSSSSSLSPKP* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01104 410 SMART rrm1_1 94 167 IPR000504 GO:0003723
Eupl13g01104 410 MobiDBLite consensus disorder prediction 391 410 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 170 410 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 227 271 - -
Eupl13g01104 410 SUPERFAMILY RNA-binding domain, RBD 37 168 IPR035979 GO:0003676
Eupl13g01104 410 MobiDBLite consensus disorder prediction 34 60 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 272 359 - -
Eupl13g01104 410 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 256 376 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 10 26 - -
Eupl13g01104 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 171 IPR000504 GO:0003723
Eupl13g01104 410 MobiDBLite consensus disorder prediction 1 88 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 361 377 - -
Eupl13g01104 410 MobiDBLite consensus disorder prediction 193 218 - -
Eupl13g01104 410 FunFam Serine/arginine-rich splicing factor SR45 2 178 - -
Eupl13g01104 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Eupl13g01104 410 CDD RRM_RNPS1 95 167 IPR034201 -
Eupl13g01104 410 Gene3D - 12 178 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01104 Eupl-Chr13 17786515 17800982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01104 95 168 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 1.16e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01104 K14325 - msin:131234305 317.005