LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g01088	ATGGATCCTCAACACCCCCTCCCTCTACTAATCTTCTTCTTAATCTGCACCTACATATCATCCTCTGCTTCTCTCTCAACCGTATCAATCTCTAAGACATCCAATCAAATCTTGATCTGTGCATTAGTACCGTCCCATGACAATCAACGACAGTCGTTCCTTAGGTGTACTAGTTTTCGTAACGGAACCCAGAATCCCATCACCACCCCTCCTAATAACTCAATTTCAGCCATCACAGCCGGTAATGGATTCCAATGTATTCTAAGGGCACCTTCCAATTCATTAAGCGTTCTCCGGTGCAAGAGATTCTCCGGTAACGGTACCGATGTACCGTATAAAAGGATCTATCGGGGTCCAATGCTACAGGAGCTTGATGCTGGGAATTCTCACATATGTGGGCGTGTCATGGGGACTAATCGTCTCGAATGCTGGCAATGGCGGGAATTCGATCGTTCCGTAGGCCATAACCTATCGGGGATCGCTGTAGGTGGAGAATTTGTATGTGGGTTGTTGGAATCTGGAAATATCACGTGCTTGGGAGACGATACGAGTATCGTCAACTATAAGCCAGATGGGAACTTCAGCGTTGTCGCGGCAGGAGATCGACATGCTTGCGCGATATCTTTGAATGGTAAGGTGGAGTGTTGGGGACAAAGAGTACAGGTCATGGGGAAGATACCAGAGGAGGAGTTCGTATCGTTGGCGTTGGGAGACGGCCGTAGTTGCGGTGTTCGGAGAAACGGAACAGTGGTGTGTTGGGGGGAGGATGATTTCAAATTGCCCGAGAGTTTAGCAGAGACTGAATTCATGACAATCCAAGGAAAAGGGAATGTTTTTTGTGGGATTGTGAAAGGGAATTATTCTTTGTTTTGTTGGGGTAATGAGATTTTTGATACTAATTCAACAGTTTTCGATAGGGTGTTGCCGGGTCCTTGTCGACGTCGAACGGCTTGCACCGAAATTTTGCCTGGTTCGGGTTCTTTGTGCAACAATGGATTTATTTGCCAACTTGATTGTGGAAGACCAGTTCCTAATGGAAGTCCACCAGCATTGCCACCGGCTCCAACGGGGTCAACACATAGCAATGGTGGGGATAAGAAAAGGGTAGCTTTCATTGTGGTGGGGTGTGTCGGGACTGTTACGTTCGCGATATCGCTTTGTTTCTTACTTTTCCGATATTGTAAAGAAAGAAGATGTCGAGTTCACGATTCCGGGAGATTGGATGAGGCGGAAGCGACACCGCAAAACCAACGCCAGCGGACGACACGGCCAGTACCGCCATCTCTAGACAAGCGGCTTAGTCAATTGGTTAGTATGGGGCATAGTAGTAAGTTGGAAGAATTCACATTCCAAGTGCTACTTCAAGCTACTGACAATTTCTCCGAGGACTATAAGATCGGGTACGGGAGTTTCGGATCGGTTTATCGAGCGACACTCGAAGACGGGAGAGAAGTTGCAATAAAGCGAGCCGAATTAACCGCCTCGTCGAATCCGGTATGCACGAAGCGACAGGATGACCAGGAGAATGCATTCCTATCCGAGCTTGCATTCCTATCTCGTGTCAACCATAAGAACCTGGTTCGCCTATTGGGGTACTGTGAAGATGGGAATGAGCGTGTGCTTGTGTACGAGTACATGCCCAACGGCACGCTCCATGACCATCTGCACAAGCTTGAGAACTCACCCCTCATGTCGTGGCTCGAACGTTTAAAGGTTGCGCTCGATGCGGCTAGGGGGATCGAGTATCTCCACACCTACGCGGTCCCACCGATCATTCATCGCGATATCAAATCATCGAACATATTACTCGACGCCACATGGATGGCAAAGGTTTCTGATTTTGGACTCTCCTTGATGGGTCCCGATGATGAGGAATCACATCTATCGTTGCGGGCAGCTGGCACTGTGGGGTACATGGACCCTGAGTACTACAGGCTCCAACAATTGACGACAAAGAGCGATGTTTATAGCTTTGGAGTGGTGTTGCTAGAGTTGTTGTCTGGGTACAGGGCCATCCATCCACAAGAAAACGGGGTACCAAGGAATGTGGTTGACTTCGTCAAGCCGTATATCGTTACCGATGAAATGCACCATGTGTTGGACCCCAAATTGCCACCCCCAACGCCATCCGAAATCGAGGCTGTCGCGCATGTGGCATACCTTGCGGCCGATTGTGTTAACCTCGAAGGCCGAGATCGCCCATCCATGACCGATATTGTATATAGTCTAGAGAGAGCCTTAACCGCATGTGTAGCACCCCCACCCTCACCGTCTGTCCTCTCACGGTCCACGACCGGGTCATCACACGTATGCCATTGCTCTCACCCTCCTCCTTAG	2337	0.4925	MDPQHPLPLLIFFLICTYISSSASLSTVSISKTSNQILICALVPSHDNQRQSFLRCTSFRNGTQNPITTPPNNSISAITAGNGFQCILRAPSNSLSVLRCKRFSGNGTDVPYKRIYRGPMLQELDAGNSHICGRVMGTNRLECWQWREFDRSVGHNLSGIAVGGEFVCGLLESGNITCLGDDTSIVNYKPDGNFSVVAAGDRHACAISLNGKVECWGQRVQVMGKIPEEEFVSLALGDGRSCGVRRNGTVVCWGEDDFKLPESLAETEFMTIQGKGNVFCGIVKGNYSLFCWGNEIFDTNSTVFDRVLPGPCRRRTACTEILPGSGSLCNNGFICQLDCGRPVPNGSPPALPPAPTGSTHSNGGDKKRVAFIVVGCVGTVTFAISLCFLLFRYCKERRCRVHDSGRLDEAEATPQNQRQRTTRPVPPSLDKRLSQLVSMGHSSKLEEFTFQVLLQATDNFSEDYKIGYGSFGSVYRATLEDGREVAIKRAELTASSNPVCTKRQDDQENAFLSELAFLSRVNHKNLVRLLGYCEDGNERVLVYEYMPNGTLHDHLHKLENSPLMSWLERLKVALDAARGIEYLHTYAVPPIIHRDIKSSNILLDATWMAKVSDFGLSLMGPDDEESHLSLRAAGTVGYMDPEYYRLQQLTTKSDVYSFGVVLLELLSGYRAIHPQENGVPRNVVDFVKPYIVTDEMHHVLDPKLPPPTPSEIEAVAHVAYLAADCVNLEGRDRPSMTDIVYSLERALTACVAPPPSPSVLSRSTTGSSHVCHCSHPPP*	779

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl13g01088	778	MobiDBLite	consensus disorder prediction	757	771	-	-
	Eupl13g01088	778	FunFam	Serine/threonine-protein kinase-like protein CCR4	546	757	-	-
	Eupl13g01088	778	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	429	545	-	-
	Eupl13g01088	778	ProSitePatterns	Protein kinases ATP-binding region signature.	466	488	IPR017441	GO:0005524
	Eupl13g01088	778	MobiDBLite	consensus disorder prediction	757	778	-	-
	Eupl13g01088	778	Gene3D	Phosphorylase Kinase; domain 1	432	545	-	-
	Eupl13g01088	778	Pfam	Regulator of chromosome condensation (RCC1) repeat	197	218	-	-
	Eupl13g01088	778	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	24	758	IPR044815	GO:0004674
	Eupl13g01088	778	SMART	serkin_6	460	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl13g01088	778	Pfam	Protein tyrosine and serine/threonine kinase	464	742	IPR001245	GO:0004672\|GO:0006468
	Eupl13g01088	778	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	591	603	IPR008271	GO:0004672\|GO:0006468
	Eupl13g01088	778	ProSiteProfiles	Protein kinase domain profile.	460	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl13g01088	778	Gene3D	-	149	329	IPR009091	-
	Eupl13g01088	778	MobiDBLite	consensus disorder prediction	408	429	-	-
	Eupl13g01088	778	SUPERFAMILY	RCC1/BLIP-II	67	301	IPR009091	-
	Eupl13g01088	778	CDD	STKc_IRAK	466	745	-	-
	Eupl13g01088	778	SUPERFAMILY	Protein kinase-like (PK-like)	434	743	IPR011009	-
	Eupl13g01088	778	Gene3D	Transferase(Phosphotransferase) domain 1	546	751	-	-
	Eupl13g01088	778	MobiDBLite	consensus disorder prediction	410	424	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g01088	Eupl-Chr13	17250111	17252680	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g01088	24	765	Receptor kinase-like Gene Family	AT5G47850	50.260	0.0	677

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Eupl13g01088		PK_Tyr_Ser-Thr	6.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g01088	-		-	qsu:111985065	924.85