Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01076 ATGGCGTCTGCTAGTCTGGGACATGGCGGTGTAGGCAGTTCCCGGACAACTAATAGCTTTAAGGGCTCATCTAGCTCAGTTGACTGGCTTGGTAGAGAGATGCTTGAAATGAGTTTAAGGGACAACAAGCCGGACCAGGATGATGATAAATTGCAGGATAGTGAACCAGATGTAATTGATGGCATGGGTGCCGAGGCAGGACATATAATAGCAACTACTACTGGTGGTCGAAATGGCCAACCCAGGCAGACAATCAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAGGCCAAATGTAGAGAGACTGGAGAAATTGTTGCTATCAAGAAGGTTCTGCAAGACAAGCGCTACAAGAATCGGGAGTTACAGATTATGCAAATGTTGGATCATCCTAACATTGTTGCTCTTAAGCATTGCTTCTTTTCAACGACAGACAAGGAAGAGCTCTACCTAAATCTTGTACTTGAATTTGTCCCGGAGACTGTTAATCGTATTGCAAGGCAATACAATAGGATCAACCAGCGAATGCCCTTAATATATGTGAAACTCTATACCTATCAGATCTGCAGATCACTTGCTTACATACATAATTGCGTTGGTATTTGTCACCGTGATATTAAGCCACAAAACTTGCTAGTGAACCCTCATACACATCAGCTGAAACTTTGTGATTTTGGAAGTGCAAAAGTATTGGTAAAAGGAGAACCAAATATCTCTTACATTTGTTCAAGATATTATCGTGCCCCTGAGCTCATCTTTGGTGCAACTGAATACACAACAGCGATAGATATGTGGTCTACAGGTTGTGTGATGGCCGAATTACTCCTTGGGCAGCCACTGTTTCCTGGAGAAAGTGGAGTGGATCAACTAGTTGAGATCATCAAGGTTCTGGGGACACCTACAAGGGAGGAGATAAAGTGCATGAATCCAAATTACATTGAATTCAAGTTCCCACAGATAAAGGCTCATCCATGGCACAAGGTTTTCCAAAAACGTTTGCCCCCAGAAGCAGTTGACCTGGTCTGCAGATTCCTGCAGTACTCTCCTAATCTGCGGTGCACTGCTTTGGAAGCTTGCATTCACCCTTTCTTTGATGAATTGAGAGACCCAAACACTCGCCTTCCTAATGGTCGCCCACTTCCTCCACTCTTCAATTTCAAACCCCAAGAGCTCTCTGGCATCCCACCCCATAATATCGGCCGGCTTATTCCTGAGCATGCTAGAAAGCAGAACTTGTTCATGGCACTGCACACCTAG 1278 0.4437 MASASLGHGGVGSSRTTNSFKGSSSSVDWLGREMLEMSLRDNKPDQDDDKLQDSEPDVIDGMGAEAGHIIATTTGGRNGQPRQTISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKEELYLNLVLEFVPETVNRIARQYNRINQRMPLIYVKLYTYQICRSLAYIHNCVGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYIEFKFPQIKAHPWHKVFQKRLPPEAVDLVCRFLQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPHNIGRLIPEHARKQNLFMALHT* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01076 425 Gene3D Transferase(Phosphotransferase) domain 1 167 415 - -
Eupl13g01076 425 FunFam Glycogen synthase kinase-3 beta 71 166 - -
Eupl13g01076 425 Pfam Protein kinase domain 89 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01076 425 MobiDBLite consensus disorder prediction 9 25 - -
Eupl13g01076 425 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 54 417 - -
Eupl13g01076 425 Gene3D Phosphorylase Kinase; domain 1 71 166 - -
Eupl13g01076 425 SMART serkin_6 87 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01076 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Eupl13g01076 425 ProSitePatterns Protein kinases ATP-binding region signature. 93 117 IPR017441 GO:0005524
Eupl13g01076 425 ProSiteProfiles Protein kinase domain profile. 87 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01076 425 CDD STKc_GSK3 82 374 IPR039192 -
Eupl13g01076 425 FunFam Shaggy-related protein kinase kappa 167 415 - -
Eupl13g01076 425 SUPERFAMILY Protein kinase-like (PK-like) 86 398 IPR011009 -
Eupl13g01076 425 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01076 Eupl-Chr13 16918566 16942873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01076 93 379 Core Cell Cycle Gene Families AT1G76540 34.915 9.74e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Eupl13g01076 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01076 K03083 - msin:131242804 827.009