LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g01074	ATGGGCTGCATTTGCTCAAAAAGGGCGGCAGAAGATGACTATGTTGAAAACCAGAGAGAGAAGGGATCGAGCAAGTCTTCAAAACGATTGGTTGCTCCCTCAAGGAGGGAGGAAATTGTAGTGGAGGTTGATGCTAGTGGTAGTGGCGGGATCAATGGAACAGCGAGGTGGATATCGAAGCCACCAGCACAAGAGAAAGTGGTCTCCACTCCAATTTCATCAGATGAGGGAGGGAAGAGGCCATTGATTATTGAGCAGCCTGCATTAGCTGATCATCAGAGACAGGTATCATTGGATATTGAGGTGAATGGAAGACTGCCACTAGTTTCAAGGTTAGTTAGTATGCCCAATGGCATTGCGGGGGAACAGGTTGCTGCGGGGTGGCCACCTTGGCTCACAGCAGTGGCTGGAGAAGCAATCAAGGGGTGGTTGCCTAGAAGGGCTGATTCATTCGAGAAATTAAACAAAATTGGACAAGGAACTTATAGCAACGTTTACAGAGCCCGAGATCTTGAAACTGGCAAAATTGTCGCACTGAAGAAAGTGCGGTTCGTTAATATGGATCCAGAAAGCGTCCGTTTTATGGCGAGGGAAATCTACATTCTGCGTAGGCTTGATCACCCAAATGTTGTGAAGCTCGAGGGTCTGGTCACATCACGGATGTCCTGCAGCTTGTACCTTGTCTTCGAATATATGGAGCATGATCTTGCTGGGCTTGCAGCATCACCGGGTATCAAGTTTACTGAACCACAGATTAAATGTTATATGCAGCAGCTACTTCGTGGGCTTGAACACTGCCATAGTCGTGGGGTCCTGCATCGAGACATCAAGGGTTCGAATCTTCTGATAGACAATAATGGTATTCTCAGGATTGCTGACTTTGGGTTGGCGAACTTTTTCCATACTGATCAGAAGCAACCGCTGACGAGCCGTGTTGTAACTCTTTGGTATCGACCTCCTGAGCTTTTGCTCGGTGCTACGGAATATGGGGTTGCTGTGGATCTGTGGAGTACCGGTTGCATCCTTGCAGAATTGCTTGCTGGGAAGCCTATCATGCCAGGAAGAACAGAGGTGGAGCAACTTCATAAGATCTTTAAGCTCTGTGGTTCGCCTTCCGAGGAGTACTGGCAGAAAGCAAGATTGCGACATGCAACAATTTTCAAGCCTCAACATCCTTACAATCGTTGTGTATCTGAGACATTCAAGGAGTTCCCTTCTTCGGCTTTGTCCCTTATGGATGTTCTCCTTGCAATAGAACCTGAAGACCGTGGATCAGCTGCTTCTGCACTTAAAAGTGAGTTCTTTAAAACAAAGCCTCTTCCCTGTGATCCATCAAGTTTGCCCAAATATCCACCAAGCAAGGAGTTTGATGCTAAGCTTCGGGTTGAGGAAACCAAAAGGCAAAAAGCAGCAGCCATAAAAGGGCATGGATCGGAATCCAGAAGAAGGGGTTCAAGAGATTCCAAAGCAGTGCCAGCTCCAGGTGCCAACACTGAACTTCAGGAATCAATACAGAAGCGACAAGGACATTCAAACCCAAAAAGCAAGAGTGACAAATATAATCCACAAGAAGATGGTGGGACTGGCTTCCCCATCGAGCCTCCCAGAGGAGCCGCACGGAATGGTTTCTCTCATTCCGCTTCATTGATTCACCCCAGTGCATTTGGATCTTCATGGAATAAGAAGGTGAAGGAAGATGAGAGTCTGGCAAGGCCTAAGCAAGCACTTGGTACTTCAAATAATGGCCCAGAGTTGAGAACACAGAGATCACACATGCCTCAGGTAGCCGCCAACTTGTCCAACTTCTCTGGTTTGGTAGCAGCAAGAAGCAGTGCACGGTTGAATAACCATAGAGAGAGGAATAAAGGTTCCCACTGGCCGGAACAGCAACTGAATGCCAGATACAATCAGCTAGATGATGCCGAGCACTCTGAAAAGCAGGAGAGAACCCACCATTTGCTGGATAGGCCAGCCTCTCCTTACAAGAAGGGTGAGAAGATATCTGGCAAGGAATCCATGGTGGGTTATGGCCCCAAGAAGAACAGGATCCACTACTCTGGACCTTTACTGCCTCCAGGGGGAAACATCGACGAAATGCTCAAAGAGCATGAAAGGCAAATCCAAGAGGCTGTCCGCAAAGCTCGTCTTGACAAGGCCAAGACTAAACAGAACTATGTTGATAATGCAGTCTTGAGCACTACTACACTCCGGGAGAAATGGTAG	2223	0.4768	MGCICSKRAAEDDYVENQREKGSSKSSKRLVAPSRREEIVVEVDASGSGGINGTARWISKPPAQEKVVSTPISSDEGGKRPLIIEQPALADHQRQVSLDIEVNGRLPLVSRLVSMPNGIAGEQVAAGWPPWLTAVAGEAIKGWLPRRADSFEKLNKIGQGTYSNVYRARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGILRIADFGLANFFHTDQKQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWQKARLRHATIFKPQHPYNRCVSETFKEFPSSALSLMDVLLAIEPEDRGSAASALKSEFFKTKPLPCDPSSLPKYPPSKEFDAKLRVEETKRQKAAAIKGHGSESRRRGSRDSKAVPAPGANTELQESIQKRQGHSNPKSKSDKYNPQEDGGTGFPIEPPRGAARNGFSHSASLIHPSAFGSSWNKKVKEDESLARPKQALGTSNNGPELRTQRSHMPQVAANLSNFSGLVAARSSARLNNHRERNKGSHWPEQQLNARYNQLDDAEHSEKQERTHHLLDRPASPYKKGEKISGKESMVGYGPKKNRIHYSGPLLPPGGNIDEMLKEHERQIQEAVRKARLDKAKTKQNYVDNAVLSTTTLREKW*	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl13g01074	740	Gene3D	Transferase(Phosphotransferase) domain 1	234	475	-	-
	Eupl13g01074	740	FunFam	probable serine/threonine-protein kinase At1g54610	234	475	-	-
	Eupl13g01074	740	SMART	serkin_6	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl13g01074	740	ProSiteProfiles	Protein kinase domain profile.	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl13g01074	740	Gene3D	Phosphorylase Kinase; domain 1	138	233	-	-
	Eupl13g01074	740	CDD	STKc_CDK9_like	151	435	-	-
	Eupl13g01074	740	FunFam	probable serine/threonine-protein kinase At1g54610	138	233	-	-
	Eupl13g01074	740	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Eupl13g01074	740	Pfam	Protein kinase domain	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl13g01074	740	PANTHER	CELL DIVISION PROTEIN KINASE	149	441	-	-
	Eupl13g01074	740	Coils	Coil	700	720	-	-
	Eupl13g01074	740	ProSitePatterns	Protein kinases ATP-binding region signature.	157	180	IPR017441	GO:0005524
	Eupl13g01074	740	MobiDBLite	consensus disorder prediction	561	589	-	-
	Eupl13g01074	740	MobiDBLite	consensus disorder prediction	465	543	-	-
	Eupl13g01074	740	MobiDBLite	consensus disorder prediction	465	488	-	-
	Eupl13g01074	740	MobiDBLite	consensus disorder prediction	573	589	-	-
	Eupl13g01074	740	SUPERFAMILY	Protein kinase-like (PK-like)	145	443	IPR011009	-
	Eupl13g01074	740	MobiDBLite	consensus disorder prediction	657	688	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g01074	Eupl-Chr13	16879124	16896735	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g01074	143	472	Core Cell Cycle Gene Families	AT5G10270	52.586	4.75e-118	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Eupl13g01074		Pkinase	1.2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g01074	-		-	ming:122066851	1071.61