Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01064 ATGCCATGTAGCAAAAGAGGAAGCTTTCTTCTATCTTTTCTTTGTCTACATACCACGGTTGTCAAAGAAGCAGAATCAAGAGAGAGAATGGGGAGAGGAAGAATTGAAATCAAGAGGATTGAAAACACTACAAACCGTCAGGTCACCTTCTGCAAGAGAAGGAATGGATTACTGAAGAAAGCTTATGAATTGTCGATTCTCTGCGACGCAGAAGTAGCACTCATCGTGTTTTCGAGCCGGGGACGCCTCTATGAATACTCCAACAACAGCATAAAATCAACAATAGAGAAGTACAAGAAGACATGTGCTAGTAGTTCAAACTCAAACTCTGTTGTGGAGGCCAATGCTCAGTACTATCAACAAGAAGCAACAAAACTACGCCAGCAAATACAAATCCTGCAGAACTCAAACAGGAACTTAATGGGTGATTCCTTGAGCTCTCTATCGGTGAAGGAGCTAAAGCAGCTGGAGAACAGACTCGAGAGAGGCATGACAAGAATTAGATCTAAGAAGCACGAGTTGATGTTCGCAGAAATCGAATACATGCAGAAAAGGGAATTGGAGCTACAAAAGGACAATATGTACCTCCACGCCAAGATAGCCGAAAATGAGCGCGAGCAACAAGCAAACATGGTAGCAGGGCCAGAGTTTGATGCGATCCAGACGTACGATTCTCGGAATTATTTCCAACTGACCATGTTTGAGGGAGGACCCACCTTCTCACATCCTGATCAGACGGCTCTCAATCTTGGGTAG 756 0.4405 MPCSKRGSFLLSFLCLHTTVVKEAESRERMGRGRIEIKRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSNNSIKSTIEKYKKTCASSSNSNSVVEANAQYYQQEATKLRQQIQILQNSNRNLMGDSLSSLSVKELKQLENRLERGMTRIRSKKHELMFAEIEYMQKRELELQKDNMYLHAKIAENEREQQANMVAGPEFDAIQTYDSRNYFQLTMFEGGPTFSHPDQTALNLG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01064 251 CDD MADS_MEF2_like 31 103 IPR033896 GO:0000977|GO:0045944
Eupl13g01064 251 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 Coils Coil 153 173 - -
Eupl13g01064 251 ProSitePatterns MADS-box domain signature. 32 86 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 Coils Coil 116 143 - -
Eupl13g01064 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 207 - -
Eupl13g01064 251 Pfam K-box region 115 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g01064 251 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl13g01064 251 SUPERFAMILY SRF-like 31 106 IPR036879 GO:0003677|GO:0046983
Eupl13g01064 251 FunFam agamous-like MADS-box protein AGL11 42 125 - -
Eupl13g01064 251 Coils Coil 184 204 - -
Eupl13g01064 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 Gene3D - 42 137 IPR036879 GO:0003677|GO:0046983
Eupl13g01064 251 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Eupl13g01064 251 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01064 Eupl-Chr13 16642404 16681296 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01064 30 251 MADS-box Gene Family AT4G09960 67.391 4.70e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl13g01064 K-box 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01064 K09264 - ming:122062804 367.081