Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01058 ATGTCTAGCTCACAAATTAACCGACCTGAATTCCATTATTCTGATAGAAAAATCATATATATGGAGCAGAGTAATACCGGCGTAGGCGACGACGCTCCGTTAGTTCCGATGGGCGGGAATTACAGAGGAGTTCGAAAGAGGAAATGGGGGAAATGGGTTTCCGAGATTCGGGAACCTGGAAAGAAAACTCGAATTTGGTTAGGGAGCTTCGAAACGCCCGAAATGGCTGCTAGTGCATATGATGTGGCCGCGTTACATTTTAGGGGACATGGGGCACGACTCAATTTTCCTGATTTGGCTAATAGGCTCCCTCGCCCAGCTAGTTCGGACCCCGATGACATTCGATCGGCAGCTCATGAAGCAGCTTCACGCCTTAGAGGACAGACGGGAAATTCCGAGGTGGGTAGCTCTAGCTCTAGCTCAAATTCCGTTCCAACGACTAGTGGATTTTCGCCAAGTCAAATTCAAGCAATTGAAGAATCGCCGTTGGACTCGCCTAAGATGTGGATTGAATTGGCGCAAGCGCTACTAATAGAGCCGCCTCAAACATTTTGTAACGATATTGGTATGAGTGATTGGGAAGATATGCAACACGATTCGCTTTGGGATTAA 612 0.4739 MSSSQINRPEFHYSDRKIIYMEQSNTGVGDDAPLVPMGGNYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAASAYDVAALHFRGHGARLNFPDLANRLPRPASSDPDDIRSAAHEAASRLRGQTGNSEVGSSSSSSNSVPTTSGFSPSQIQAIEESPLDSPKMWIELAQALLIEPPQTFCNDIGMSDWEDMQHDSLWD* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01058 203 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Eupl13g01058 203 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Eupl13g01058 203 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Eupl13g01058 203 MobiDBLite consensus disorder prediction 125 152 - -
Eupl13g01058 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 159 - -
Eupl13g01058 203 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Eupl13g01058 203 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Eupl13g01058 203 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Eupl13g01058 203 CDD AP2 40 99 IPR001471 GO:0003700|GO:0006355
Eupl13g01058 203 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Eupl13g01058 203 MobiDBLite consensus disorder prediction 120 152 - -
Eupl13g01058 203 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01058 Eupl-Chr13 16503048 16504182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01058 41 203 AP2-EREBP Transcription Factor Family AT1G71450 60.366 2.87e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl13g01058 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01058 - - nnu:104589184 245.743