LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl13g01034	ATGGAGGATTATTCGCAACTGAACGAGAATACAAGCACAAGGGGGAGTTTCTTATACGCTGCTCCTTTGCTTGCACCGAATTCTTCTCTTTATGGAAGAACCAGCAGTGGTTCTAACGTGAATCATCCGCAGACACAGCTGCCGATTAACACCTTTCACCTTGAATCCGGCGAGTCTTTTCTCTCTGAAGCGCCTCCGATCGTGAAGACCGAAGCGAGCTCTTCACAACATGTTCAAGAATCTCATTATCCTCTTCTTAGAGGACATCCATCAGTGCATCATCATCATCATCATCAACAACAACAACAACAACAACAACAACAACAACAACACGGAGGGAACGATAGCTCAAATGACGTTGATGCCATTAAGGCCAAGATCGTCTCCCACCCTCAGTATTCTAACCTTTTGGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCACCTGAAGTGGTTGCTCGGCTCGCGGCCGTTCGGCGGGAGTTCGAGACGCGGCAGCGATCTTCTGTTACTTGCAGGGATGCTTCAACAGACCCAGAACTCGATCAGTTCATGGAAGCGTACTGCGATATGCTGGTTAAATACCGTGAGGAGCTAACGAGGCCGTTGCAAGAAGCCATGGAGTTTATGCGAAGGATCGAAGCGCAGCTTAATATGATAAGTAATGGACCTGTAAGGATCTTTTCCCCAGATGAAAAGTGTGAAGGAGTTGGTTCATCTGAAGAGGATCAAGACAATAGCGGGGGAGAAACAGAACTTCCTGAGATCGATCCTCGTGCGGAAGACAGAGAACTTAAGAATCACCTATTGAAGAAGTATGGTGGTTACTTAGGCAGCCTTAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAGTTGCCAAAGGATGCTAGGCAGAAGCTACTGAATTGGTGGGAGCTACACTACAGATGGCCATATCCATCGGAGACTGAGAAGGTGGCCTTGGCGGAATCAACTGGTTTAGACCAGAAACAAATTAATAACTGGTTTATCAACCAAAGAAAACGACATTGGAAACCTTCTGAAGACATGCAATTTGTAGTGATGGATGGGCTCCATCCCCAAAATGCAGCTCTTTATATGGAAGGTCACCTTATGGGTGATGGTACTTACCGTTTGGGGCCATGA	1152	0.4644	MEDYSQLNENTSTRGSFLYAAPLLAPNSSLYGRTSSGSNVNHPQTQLPINTFHLESGESFLSEAPPIVKTEASSSQHVQESHYPLLRGHPSVHHHHHHQQQQQQQQQQQQHGGNDSSNDVDAIKAKIVSHPQYSNLLEAYMDCQKVGAPPEVVARLAAVRREFETRQRSSVTCRDASTDPELDQFMEAYCDMLVKYREELTRPLQEAMEFMRRIEAQLNMISNGPVRIFSPDEKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLKKYGGYLGSLKQELSKKKKKGKLPKDARQKLLNWWELHYRWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGLHPQNAALYMEGHLMGDGTYRLGP*	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl13g01034	383	MobiDBLite	consensus disorder prediction	101	117	-	-
	Eupl13g01034	383	MobiDBLite	consensus disorder prediction	87	119	-	-
	Eupl13g01034	383	ProSiteProfiles	ELK domain profile.	265	285	IPR005539	GO:0003677
	Eupl13g01034	383	SMART	HOX_1	287	352	IPR001356	GO:0003677
	Eupl13g01034	383	Pfam	Homeobox KN domain	305	344	IPR008422	GO:0003677\|GO:0006355
	Eupl13g01034	383	ProSitePatterns	'Homeobox' domain signature.	323	346	IPR017970	GO:0000981\|GO:0006355
	Eupl13g01034	383	Pfam	ELK domain	265	286	IPR005539	GO:0003677
	Eupl13g01034	383	CDD	homeodomain	297	349	IPR001356	GO:0003677
	Eupl13g01034	383	Pfam	KNOX2 domain	177	221	IPR005541	GO:0003677\|GO:0005634
	Eupl13g01034	383	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	95	354	-	-
	Eupl13g01034	383	FunFam	Homeobox protein knotted-1-like 2	290	352	-	-
	Eupl13g01034	383	SMART	KNOX1_2	121	165	IPR005540	GO:0003677\|GO:0005634
	Eupl13g01034	383	SMART	ELK_2	265	286	IPR005539	GO:0003677
	Eupl13g01034	383	SMART	KNOX2_2	172	223	IPR005541	GO:0003677\|GO:0005634
	Eupl13g01034	383	Gene3D	-	290	352	-	-
	Eupl13g01034	383	ProSiteProfiles	'Homeobox' domain profile.	285	348	IPR001356	GO:0003677
	Eupl13g01034	383	MobiDBLite	consensus disorder prediction	232	261	-	-
	Eupl13g01034	383	SUPERFAMILY	Homeodomain-like	286	360	IPR009057	-
	Eupl13g01034	383	Pfam	KNOX1 domain	122	164	IPR005540	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl13g01034	Eupl-Chr13	15897986	15909112	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl13g01034	66	383	Homeobox Transcription Factor Family	AT4G08150	69.255	6.65e-148	422

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Eupl13g01034		KNOX2	1.6e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl13g01034	-		-	vvi:100255834	609.372