Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01032 ATGAGAGCCATAGATGAAAAGTGTGAAGGAGTTGGTTCATCTGAAGAGGATCAAGACAATAGCGGGGGAGAAACAGAACTTCCTGAGATCGATCCTCGTGCGGAAGACAGAGAACTTAAGAATCACCTATTGAAGAAGTATGGTGGTTACTTAGGCAGCCTTAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGGAAGTTGCCAAAGGATGCTAGGCAGAAGCTACTGAATTGGTGGGAGCTACACTACAGATGGCCATATCCATCGGAGACTGAGAAGGTGGCCTTGGCGGAATCAACTGGTTTAGACCAGAAACAAATTAATAACTGGTTTATCAACCAAAGAAAACGACATTGGAAACCTTCTGAAGACATGCAATTTGTAGTGATGGATGGGCTCCATCCCCAAAATGCAGCTCTTTATATGGAAGGTCACCTTATGGGTGATGATGGTTGTCAGACAGTGCTGAAGTTCCAGTTACTACATTGCCAAGTATCTTTTCTATGTGGTGTTCAGTTTTCCAGGGACATTTATGAATCGCCTGTCTTGATTGATGATGTACTCTTGCTGAAGCTTATATTTGGTGCTGAATTCTTTACTGATAAGATACTGATAATACTCTGGGAAATATTGATTCCTGATTTAGGTGAGAGATCGTCATGCTTGCCATCATATTTAGCAACTCTATTTGCTAAATATGCATGGGAACTCCTCGAGATTGGAAACGCCTTCCATATTAATGTTCTCAGCTTCCATGTGCAGCAGACGTGTAGGATTGGAAAGATTTTCTCTAGAGGAAATCTCTAG 807 0.4176 MRAIDEKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLKKYGGYLGSLKQELSKKKKKGKLPKDARQKLLNWWELHYRWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGLHPQNAALYMEGHLMGDDGCQTVLKFQLLHCQVSFLCGVQFSRDIYESPVLIDDVLLLKLIFGAEFFTDKILIILWEILIPDLGERSSCLPSYLATLFAKYAWELLEIGNAFHINVLSFHVQQTCRIGKIFSRGNL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01032 268 Pfam ELK domain 38 59 IPR005539 GO:0003677
Eupl13g01032 268 SMART ELK_2 38 59 IPR005539 GO:0003677
Eupl13g01032 268 CDD homeodomain 70 122 IPR001356 GO:0003677
Eupl13g01032 268 Pfam Homeobox KN domain 78 117 IPR008422 GO:0003677|GO:0006355
Eupl13g01032 268 FunFam Homeobox protein knotted-1-like 2 63 125 - -
Eupl13g01032 268 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Eupl13g01032 268 SUPERFAMILY Homeodomain-like 59 133 IPR009057 -
Eupl13g01032 268 ProSiteProfiles ELK domain profile. 38 58 IPR005539 GO:0003677
Eupl13g01032 268 SMART HOX_1 60 125 IPR001356 GO:0003677
Eupl13g01032 268 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 127 - -
Eupl13g01032 268 ProSiteProfiles 'Homeobox' domain profile. 58 121 IPR001356 GO:0003677
Eupl13g01032 268 Gene3D - 63 125 - -
Eupl13g01032 268 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01032 Eupl-Chr13 15823485 15827202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01032 5 149 Homeobox Transcription Factor Family AT4G08150 85.714 8.02e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Eupl13g01032 Homeobox_KN 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01032 - - aew:130776633 262.307