Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01029 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAATGTTAAGAAAGGGCCATGGTCACCGGAAGAAGATGCCAAGCTGAAGACCTATATCGAGCAGCATGGTACTGGTGGCAACTGGATCGCTTTGCCACAGAAAATTGGCCTTAAGCGATGTGGGAAGAGCTGCCGTCTCAGGTGGTTGAACTATCTCCGTCCAAACATCAAGCACGGGGGATTCTCGGAGGAAGAAGATAACATAATTTGTAGCCTCTATATAAGTATCGGAAGCAGGTGGTCTATCATCGCAGCACAATTACCAGGACGAACCGATAATGATATAAAGAACTATTGGAACACAAGGCTGAAGAAGAAGCTCTTGGGTAAGCAGCGGAAGGAACAACAAGCTCGAAGAGGTGCTTCCTTAAAGCAAGAGATGAAGAAAGTGAGTGGGAATTTCTTGGTTGCTGCTGATAACGGGACCCAAAGCCCATACTGGCCGCTAGAGCCGCCTATACCTGTATCAATGCCCTACCCAAATCAAGATCAGTCTCTAAATGACCACACATCAATTAGGAAATTGCTGGTCAAGCTTGGGGGGAGATTTTCTGATGATGATCAACAACAACCAAATGAAGATTGTACAAATCTTCAGTGTCCACTTGATATGGCCTCAACCCAACAACAATTTTATGAGAACTCCATCAATTTTGCCTCTTCTTCTGCTTCTATGAATTCCTTGAACAACACTTGTTCTCAATTGCCGAACACTCAGTATGATATCGACAGAACGATTATGCAAATGTTGCAAGGACTTAACAACTTTCCAGTTGATCTTGATGAGATGGTCTATAGCAACCCACATAAAATAGAGGGATTGGAGTGTTTTTATGGAGTAGGCATGGTCAATGGCAACACTGGAACTAATTCAGCTGAAAGCAGCAGTTGGGTTGATATGGGCTCTTTGGTTTATCCCCCTATAGTCTCCAACAACGAAGTTTGCCAACAAGGGATGCTACAAGAAAGTGCTTTTGAGGAATCAAGGTATAACCTTGGGTCGCAGTAA 1038 0.4412 MGRAPCCDKANVKKGPWSPEEDAKLKTYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQARRGASLKQEMKKVSGNFLVAADNGTQSPYWPLEPPIPVSMPYPNQDQSLNDHTSIRKLLVKLGGRFSDDDQQQPNEDCTNLQCPLDMASTQQQFYENSINFASSSASMNSLNNTCSQLPNTQYDIDRTIMQMLQGLNNFPVDLDEMVYSNPHKIEGLECFYGVGMVNGNTGTNSAESSSWVDMGSLVYPPIVSNNEVCQQGMLQESAFEESRYNLGSQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01029 345 Gene3D - 70 141 - -
Eupl13g01029 345 FunFam Transcription factor RAX3 70 143 - -
Eupl13g01029 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Eupl13g01029 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Eupl13g01029 345 CDD SANT 71 113 IPR001005 -
Eupl13g01029 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Eupl13g01029 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Eupl13g01029 345 PANTHER OS09G0431300 PROTEIN 1 248 - -
Eupl13g01029 345 Gene3D - 7 68 - -
Eupl13g01029 345 SMART sant 67 115 IPR001005 -
Eupl13g01029 345 SMART sant 13 64 IPR001005 -
Eupl13g01029 345 CDD SANT 16 62 IPR001005 -
Eupl13g01029 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Eupl13g01029 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Eupl13g01029 345 FunFam Transcription factor RAX3 7 68 - -
Eupl13g01029 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01029 Eupl-Chr13 15723029 15724980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01029 1 315 MYB Transcription Factor Family AT3G49690 49.699 4.48e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g01029 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01029 K09422 - nnu:104591221 469.929