Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01015 ATGGGTGCCGACGATAATGGTGATTTGGGATTTCAGCAGAGAGTTGGGAGCCTTTTGAATTGTCCATCTTTGGGGATGTACGCGGCTTCGCAGCCTGAGAAGGTTGCGGAAACGACCATGAGCGCGATGTCCATGTGTAAATCTTCAAATGGAGTCGACTCATTCTTGGGTACTACCTGGGATCCTCTGGTTTCGCTGTCCCAGAATGTGGAATTTAAAGGTTCTTCAATGGCTCCTCACCATCAGATCGCTACTTCTTCCTATGGGGTTGATGTACTGGAAAACCAGGGAATCAGTAGCACCTCTCACCTTGTTCAGTATCCATCTGATCCTAGTCTTGTTGAGTTAGCATCTAAGCTTCCATGCTTTGGCAGTGGGAGCTTCTCCGAGATGATTAGTTCCTTTGGCCTGCTTGATTGTGACCAGATTGCTAATGCTGGTGGTCCTCCTGATTATCCCTCAAACAAGGAGGTTGGCACTGAAAATACTTCAACAAGTTCCAGGGAGGTGGCTAATCATGGTCCAATCTTTCAAGAGACACTCCAAATTTCAGATGAGGGAACCGCACAACCTTCGCCTAACGGAAAGAAAAGGAAAAGGGTGCCCGAAAACTGTGCAAAAGGGACCCATTCTCAATTTGATTCCATTCAGAGGCTAGAAGTGGAGCAACAACAGGATGTTTCACAGGAGGATGTGAAGAAACGGAAAACTGAACAGAACTCGGGTACAAATTTGCGTGGTAAGCTAACTGGCAAACAACCTAAAGACAATTCCCAGAATGGGCAAGATCCAAAAGAAGATTACATTCATGTGAGAGCCAGGCGAGGCCAAGCTACCAATAGTCACAGCCTTGCAGAAAGAGTGAGAAGAGAAAAAATAAGCGAGCGGATGAGGTTTCTTCAAGATCTTGTTCCAGGATGCAATAAGATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAACTATGTGCAGTCACTGCAACGGCAGGTCGAGTTTCTGTCGATGAAACTTGCCACTGTCAATCCAGAACTGAATATTGATATAGAACGGATTCTATGCAAAGATTTCACTCCATTGCAGATTCTTCATTCACGAGGCGGGGGTTCAGCTATTTTCGGACTTGGTCCTGGAATTAGTTCTTCTCAACCACAGTTGCATATTACCCCACAGGGAGCCATGCTAGCTATCCAGAGTACAGAACCACAGTTACACCCCATGCATCAGATACCAAGTGGATGGGATGATGAGCTCCAAAGTGTTATTCAGATGGGATTCGTCTCTAACCAAGCTCTCGACGGTCTGGGACTGAACGGTAAAAGTCAGATGTTGATTTGA 1338 0.4589 MGADDNGDLGFQQRVGSLLNCPSLGMYAASQPEKVAETTMSAMSMCKSSNGVDSFLGTTWDPLVSLSQNVEFKGSSMAPHHQIATSSYGVDVLENQGISSTSHLVQYPSDPSLVELASKLPCFGSGSFSEMISSFGLLDCDQIANAGGPPDYPSNKEVGTENTSTSSREVANHGPIFQETLQISDEGTAQPSPNGKKRKRVPENCAKGTHSQFDSIQRLEVEQQQDVSQEDVKKRKTEQNSGTNLRGKLTGKQPKDNSQNGQDPKEDYIHVRARRGQATNSHSLAERVRREKISERMRFLQDLVPGCNKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELNIDIERILCKDFTPLQILHSRGGGSAIFGLGPGISSSQPQLHITPQGAMLAIQSTEPQLHPMHQIPSGWDDELQSVIQMGFVSNQALDGLGLNGKSQMLI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01015 445 MobiDBLite consensus disorder prediction 208 223 - -
Eupl13g01015 445 MobiDBLite consensus disorder prediction 156 191 - -
Eupl13g01015 445 MobiDBLite consensus disorder prediction 242 258 - -
Eupl13g01015 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 327 IPR011598 GO:0046983
Eupl13g01015 445 FunFam Basic helix-loop-helix transcription factor 274 346 - -
Eupl13g01015 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 344 IPR036638 GO:0046983
Eupl13g01015 445 Pfam Helix-loop-helix DNA-binding domain 280 328 IPR011598 GO:0046983
Eupl13g01015 445 Gene3D - 274 348 IPR036638 GO:0046983
Eupl13g01015 445 SMART finulus 283 333 IPR011598 GO:0046983
Eupl13g01015 445 MobiDBLite consensus disorder prediction 148 265 - -
Eupl13g01015 445 CDD bHLH_AtBPE_like 267 352 - -
Eupl13g01015 445 MobiDBLite consensus disorder prediction 224 241 - -
Eupl13g01015 445 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 179 394 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01015 Eupl-Chr13 15401639 15405940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01015 182 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 52.400 2.21e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g01015 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01015 - - nnu:104609097 550.436