Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00992 ATGCCAATGCTTCAGCTTTCTGACTGGAGAAGAGATGGGGATATTAGATTTGATGTTGGTGGAGGTGGGCATGTTCTAGATCTTGACACTGCTGTCAAAGATGGGGTTTTGGGTGGTGGTGGAGGTTGTGGTGGCGTTGGTGGTGGTGAGAAGTTGGATCTGAAGAAGATGATCGAAGAGCTCGATTTGTTAGACGTTCCATCGGTTTTCATTTGCCCCATCTCTCTTGAACCAATGCAAGACCCTGTGACACTTTGCACAGGCCAGACCTATGAGAGATCCAACATTCTCAAATGGTTCTCTCTGGGTCACTTTACCTGCCCCACAACCATGCAAGAGCTCTGGGATGATTCAATCACACCCAACAAGACCCTCTACCATCTTATCTACAGTTGGTTCTCTCGGAAGTACTTGATCATGAAGAAGCGATCGGAGGATGTACAGGGCAGGGCGTCTGAGCTTCTGGAGACATTAAAGAAGGTCAAGGGTCAGGCTAGGGTACAAGCTCTCAAGGAGCTTCAACAGGTTGTGGCTGCCCACGCCTCTGCGAAGAAGACAGTGGTGGATGAAGGTGGGGTTGCTTTGATTTCGTCTCTATTGGGTCCTTTCACCTCTCATGCAGTTGGTTCTGAAGCCATTGCAATTCTTGTGAACTTGACACTTGATTCGGAATCGAAGACGAATTTGATGCAGCCCGCGAAAATCTCATTGATGGTGGACATGTTGAATGAGGGATCAATCGAGACTAAGATCAATTGTACGAAGCTGATCGAAATGTTGATGGACGAGAAGGATTTCCGATCAGAAATTGTCTCAAGCTTGAGCCTTTTAGTTGGGTTGTTGAGGCTGGTAAAGGATAAGAGACACTCGAGCGGGGTCTCGGCGGGGCTTAATCTTTTAAGGACTATATGTTCACATAAACAAGTTAGGAACTTGGTTGTGAGCATAGGGGCTGTACCCCAGTTGGTCGAGCTATTACCGGGTTTGAATCCTGATTGCTTGGAGCTAACGCTTTTCATCTTGGACGTTCTGTCGACTCTGCCTGAGGGAAGGTCAGCTCTGAAGGATTGCCCCAGCACAATTCCAAATCTGGTGAGGCTCTTGATGAGGGTTTCAGAGAGCTGTACTCAATATGCATTGTCAATCTTGTGGGCAGTCTGCAAGCTAGCCCCTGAGGAGTGCGCATCTCTCGCTGTTGAAGCAGGTCTGGCGGCAAAGCTCTTACTTGTCATTCAGAGCGGTTGCAATCCTGTTCTGAAGCAACGCTCAGCAGAGCTCTTGAAGTTGTGTAGTCTAAATTACACAGCAACCATCTTCATTTCCAAGTGTAAGCTTACGAGAACGATCCAATGA 1353 0.4775 MPMLQLSDWRRDGDIRFDVGGGGHVLDLDTAVKDGVLGGGGGCGGVGGGEKLDLKKMIEELDLLDVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNKTLYHLIYSWFSRKYLIMKKRSEDVQGRASELLETLKKVKGQARVQALKELQQVVAAHASAKKTVVDEGGVALISSLLGPFTSHAVGSEAIAILVNLTLDSESKTNLMQPAKISLMVDMLNEGSIETKINCTKLIEMLMDEKDFRSEIVSSLSLLVGLLRLVKDKRHSSGVSAGLNLLRTICSHKQVRNLVVSIGAVPQLVELLPGLNPDCLELTLFILDVLSTLPEGRSALKDCPSTIPNLVRLLMRVSESCTQYALSILWAVCKLAPEECASLAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATIFISKCKLTRTIQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00992 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Eupl13g00992 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Eupl13g00992 450 Gene3D - 140 445 IPR011989 -
Eupl13g00992 450 SUPERFAMILY ARM repeat 154 283 IPR016024 -
Eupl13g00992 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 139 IPR013083 -
Eupl13g00992 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Eupl13g00992 450 SUPERFAMILY RING/U-box 60 136 - -
Eupl13g00992 450 SUPERFAMILY ARM repeat 265 433 IPR016024 -
Eupl13g00992 450 PANTHER WDSAM1 PROTEIN 60 434 IPR045185 GO:0061630
Eupl13g00992 450 CDD RING-Ubox_PUB 67 117 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00992 Eupl-Chr13 14946914 14949872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00992 1 450 U-box Gene Family AT3G49810 74.667 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00992 - - ming:122092465 754.592