Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00976 ATGGGCGCTCCTAAGCAAAAATGGACATCGGAAGAAGAAGCGGCCCTTAAAGCTGGAGTAGTTAAGCATGGGGCAGGAAAATGGCGCACAATACTGAAAGATCCAGAATTCAGTGGCGTCTTGTCTTTGCGTTCGAATGTGGATCTCAAGGACAAGTGGAGAAACATGAGTGTGACAGCAAATGGGTTTGGGTCTCGGGAGAAGGCTAGGTTAGCACTAAAAAGGAGTCAATGGATCCTTAAACCCGATGATAACCCTTTGGCCTTTAGTTCGAGAGTTCAGAGTGATGAAGAAATTGTTGATGCTAAACCTCTTGCAATTTCCAGTGCAACATTGCAGGTCTCTGGTCCAAAAAAATCAATTTCAAGGCTGGACAATCTTATATTAGAAGCTATAACCAATTTGAAGGAGCCCAGTGGGTCCAACAAGACTGCTATTGCTATGTACATAGAGGATCAATACTCTGCACCTCCAAACTTCAAAAGGGTCTTGTCAGCAAAATTGAAGATTTTGACCGCGAGTGGGAGATTGATTAAGGTAAAGCGCAAGTACAGGATCGCACCAAGCTCGGTTTTCTCGGAAGGAAGAAGAAGCCCTGGGATGCTACTCCTGGAGGGAAGGCAGAAGGTTTCCCCCCGAGTAGAAAAAGATGACATCAAGATTCTTACTAGATCCCAGATTGATGCAGAACTAGTGAAGATGAGAAATATGACTGCACAGGAGGCTGCTGCAGCTGCTGCACAAGCAGTTGCGGAGGCAGAAGCAGCCATGGCAGAAGCTGAAGAGGCAGCAAGGGAGGCAGAGGCAGCTGAAGCCGATGCTGAAGTAGCACAAGCTTTTGCTGAAGCAGCAATGATGACTTTGAAAACGAGAAACACATCGAAGCTGCTAATGCAAATGCAGGATTCATCTTATGCCAGTGAACCACCCCGGCTCTAG 939 0.4665 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSGVLSLRSNVDLKDKWRNMSVTANGFGSREKARLALKRSQWILKPDDNPLAFSSRVQSDEEIVDAKPLAISSATLQVSGPKKSISRLDNLILEAITNLKEPSGSNKTAIAMYIEDQYSAPPNFKRVLSAKLKILTASGRLIKVKRKYRIAPSSVFSEGRRSPGMLLLEGRQKVSPRVEKDDIKILTRSQIDAELVKMRNMTAQEAAAAAAQAVAEAEAAMAEAEEAAREAEAAEADAEVAQAFAEAAMMTLKTRNTSKLLMQMQDSSYASEPPRL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00976 312 SMART sant 4 59 IPR001005 -
Eupl13g00976 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Eupl13g00976 312 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00976 312 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Eupl13g00976 312 Gene3D - 2 58 - -
Eupl13g00976 312 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Eupl13g00976 312 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00976 312 PANTHER SINGLE MYB HISTONE 4 1 297 IPR044597 GO:0003691
Eupl13g00976 312 Gene3D - 118 194 IPR036388 -
Eupl13g00976 312 FunFam Telomere repeat-binding factor 1 118 198 - -
Eupl13g00976 312 SUPERFAMILY "Winged helix" DNA-binding domain 118 197 IPR036390 -
Eupl13g00976 312 Coils Coil 239 280 - -
Eupl13g00976 312 FunFam Telomere repeat-binding factor 1 2 58 - -
Eupl13g00976 312 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Eupl13g00976 312 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl13g00976 312 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00976 Eupl-Chr13 14670390 14684152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00976 1 299 Single Myb Histone (SMH) Gene Family AT1G49950 62.745 1.31e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl13g00976 Linker_histone 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00976 K09422 - nnu:104601593 409.453