Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00955 ATGAAGATGGAGATTCCGGCAAGCGACGCATACATGGGACGGAGCCTTGGTGATCTGAGCAACGGTGATTATTCGTCCACGGCCTTTAGCGATTGCAATAGCGATAGATCCGGAGAGTTCTCGACAACCTCTTCGCAGAGCCGTGGTCTCCTGATTGCTTGCGCTTCTGCGAATTCCTCCGATGTGATCCGTCAGCTTGTATCCGATCTCGAGTCCTGTTCGATCGACGTGCAGAGACAAGCAGCCCTGGAGATTCGCCTCCTCGCGAAGGACAAGCAAGAAAATCGCCTCAAGATTGTTCGAGCTGGTGCTGTAAGACCTCTTATTTCTTTTATCTTGTCTTCTGATTCTCAGCTTCAAGAGTACGGCGTCACAGCGATATTAAACCTTTCTCTGTGCGATGATAACAAAGATCTAATCGTCAATTCGGGGGCGATTAAACCACTCGCGAGAGCTCTCAATACCGGAACCGCGACGGCGAAGGAGAACGCAGCTTGTGCTCTGCTTCGCCTCTCGCAGATCGAAGAGAACAAAATTTTGATTGGCCGGTCAGGAGCGATCCCTCTCCTGGTTAAATTATTGGAGAACGGAAGTTCTCGCGGGAAAAAGGACGCATCAACTGCTCTTTATTCGCTCTGTTCCCTGAAGGAGAACAAAATCAGAGCCGTTAAAGCCGGAATCATGAAACCACTCGTGGAATTAATGGCAGATTTCGAGTCTGGTATGGTTGATAAAGCGGCTTTCGTTCTGAGCACCCTGGTTGCGGTTCCGGAAGCAAAAACCACTTTGGTTGAGGAGGGTGGTATTCCGGTACTGGTCGAAATCGTGGAGGTCGGACAAAAACGTCAGAAGGAGATCGCAACGGTGATTTTACTGGAGATCTGCGAAAACAGCTTGGCGTATCGGACTATGGTAGCCCGCGAAGGAGCGATACCGCCGTTGGTCGCTTTGTCACAGTCCGGCACGACTCGAGCTAAACAGAAGGCGGAGACACTCATTGAGCTTCTACGGCAACCGAGATCCGGCAATCGCGCAGAATAG 1041 0.5091 MKMEIPASDAYMGRSLGDLSNGDYSSTAFSDCNSDRSGEFSTTSSQSRGLLIACASANSSDVIRQLVSDLESCSIDVQRQAALEIRLLAKDKQENRLKIVRAGAVRPLISFILSSDSQLQEYGVTAILNLSLCDDNKDLIVNSGAIKPLARALNTGTATAKENAACALLRLSQIEENKILIGRSGAIPLLVKLLENGSSRGKKDASTALYSLCSLKENKIRAVKAGIMKPLVELMADFESGMVDKAAFVLSTLVAVPEAKTTLVEEGGIPVLVEIVEVGQKRQKEIATVILLEICENSLAYRTMVAREGAIPPLVALSQSGTTRAKQKAETLIELLRQPRSGNRAE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00955 346 SUPERFAMILY ARM repeat 59 336 IPR016024 -
Eupl13g00955 346 Gene3D - 160 343 IPR011989 -
Eupl13g00955 346 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Eupl13g00955 346 FunFam RING-type E3 ubiquitin transferase 52 342 - -
Eupl13g00955 346 Gene3D - 39 159 IPR011989 -
Eupl13g00955 346 SMART arm_5 133 173 IPR000225 GO:0005515
Eupl13g00955 346 SMART arm_5 215 255 IPR000225 GO:0005515
Eupl13g00955 346 SMART arm_5 256 296 IPR000225 GO:0005515
Eupl13g00955 346 SMART arm_5 297 338 IPR000225 GO:0005515
Eupl13g00955 346 SMART arm_5 92 132 IPR000225 GO:0005515
Eupl13g00955 346 SMART arm_5 174 214 IPR000225 GO:0005515
Eupl13g00955 346 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Eupl13g00955 346 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Eupl13g00955 346 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Eupl13g00955 346 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00955 Eupl-Chr13 14356561 14358657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00955 38 343 U-box Gene Family AT2G23140 49.045 1.23e-89 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00955 - - nnu:104590389 535.028