Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00942 ATGGAGCATGTTAGAGCCTTGTCTGAGGGTGAATGGAGTTCTTATAATGGAACGTTCTCCACTGACGAGGCCGATTTCATGGCACAGTTGCTCGGTAACTTCTCGTCTTCGAGCGAACAAGATGAGGGTGCCCCATCTACTTTTTGGCCTAGTCATGAACCTACATTGAAGATGGCGAGGTTCGATGAGAATTCATATTATTGTTCAGATACTGTTAACTCTAATTTAATCTGTTTTCCCCAAGAGGGCCATGAAAACTACTACTTAAGTGGTTCTAATCCAATTCTGATGACCTATAATAGTTCCATGTCCATGGAATTCTGTATGATGGATGAGCAAAACACCAGCTCGTCGATTCAGGTCTTTCACGACAATGTAATGGAAGAGGATGTTTGCTTGAACGAAGAGATGAGCGGCGGCAGTTTGGGAGAGTTAAGAGGAAACCCACCAGAAGCTGTTGTTCTTCCTGATCAGAAATTGAATCCGAAGAGGAAATTCGAGATGCCACAACCAGATATAACCACAGAAGATAAAAACAACACCAATTCATCGGAGAATCCTAAGAAGAAATCTCGGGTTTCGGCAGATGTCCAAAGGAACAAGAAGAATGTACATTCGAAGAAGAATCAGAAGCTCACCCCAATTAGTATTGACGAAGAAGAGACTAATGCTGGTTTGAATGGGCAAAGCTCTAGCAGTTACAGCTCTGAGGATGACTCTCAGGAACTAAACGGCGGAGCGACTTCCAGCTCCAAAGGGTCTGCAGCTCTCAACTTGAATGGAAAAGCAAGAGCCAGTAGGGGATCCGCTACCGATCCGCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCCTACAGAACTTGGTCCCTAATGGAACAAAGGTTGACATCAGTACAATGCTTGAAGAAGCTGTTGAGTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTCTTAAGCTCTGATGATCTATGGATGTACTCTCCTATCGCTTACAACGGAATGGATATTGGGCTCAACCTGAAGATATCTTCGCCACGATGA 1062 0.4379 MEHVRALSEGEWSSYNGTFSTDEADFMAQLLGNFSSSSEQDEGAPSTFWPSHEPTLKMARFDENSYYCSDTVNSNLICFPQEGHENYYLSGSNPILMTYNSSMSMEFCMMDEQNTSSSIQVFHDNVMEEDVCLNEEMSGGSLGELRGNPPEAVVLPDQKLNPKRKFEMPQPDITTEDKNNTNSSENPKKKSRVSADVQRNKKNVHSKKNQKLTPISIDEEETNAGLNGQSSSSYSSEDDSQELNGGATSSSKGSAALNLNGKARASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYSPIAYNGMDIGLNLKISSPR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00942 353 MobiDBLite consensus disorder prediction 158 172 - -
Eupl13g00942 353 MobiDBLite consensus disorder prediction 141 255 - -
Eupl13g00942 353 MobiDBLite consensus disorder prediction 182 203 - -
Eupl13g00942 353 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Eupl13g00942 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 52 342 - -
Eupl13g00942 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 334 IPR036638 GO:0046983
Eupl13g00942 353 MobiDBLite consensus disorder prediction 261 280 - -
Eupl13g00942 353 FunFam Basic helix-loop-helix transcription factor 270 327 - -
Eupl13g00942 353 Gene3D - 271 332 IPR036638 GO:0046983
Eupl13g00942 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Eupl13g00942 353 MobiDBLite consensus disorder prediction 216 255 - -
Eupl13g00942 353 SMART finulus 275 324 IPR011598 GO:0046983
Eupl13g00942 353 CDD bHLH_AtIND_like 270 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00942 Eupl-Chr13 14172643 14174362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00942 10 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 41.176 1.17e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00942 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00942 - - ming:122090569 378.252