Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00940 ATGAGTGCAATCGTTCCTCCTGTCCCGGGGAGGGAGCTATCGAACCCTCCTTCGGATGGTATTTCAAACCTTAGATTCTCTAATCACAGCGATCGTCTCCTCGTTTCCTCATGGGACAAGAGTGTTCGATTGTACGATGCGAGCGCAAATGTCTTGAGGGGTGAGTTCATGCATGGAGGCCCAGTGTTGGATTGCTGCTTTCATGACGATTCCTCGGGCTTTAGCGCTGGTGGAGATAATACTGTTAGGAGGTATGTTTTCAGCTCTGGCAAAGAGGATATATTGGGAAGGCATGATGCACCTGTGCGCTGTGTTGAGTACTCTTATGCAGCAGGGCAAGTGATCACTGGGAGTTGGGACAAAACTCTGAAGTGTTGGGATCCTAGAGGTGCAAGTGGACAGGAGCGGACTCTTGTCGGGACATACCCACAACCTGAGCGTGTGTATTCTCTTTCACTTGTTGGTAACCGTTTAGTGGTAGCAACTGCAGGAAGACATGTGAATGTGTATGATTTGCGGAACATGTCCCAACCAGAGCAACGGAGGGAGTCTTCATTGAAATATCAAACTAGATGTGTGCGTTGTTATCCCAATGGAACAGGTTTTGCTCTTAGTTCTGTGGAAGGTCGCGTTGCGATGGAGTTCTTCGATCTCTCTGAGGCTGGTCAAGCCAAGAAATACGCTTTCAAGTGCCATCGAAAATCAGAGGCTGGAAGGGACACTGTGTATCCTGTCAATGCCATCGCATTCCACCCCATCTATGGTACATTTGCAACGGGAGGTTGTGATGGGTATGTAAACGTGTGGGATGGCAACAACAAGAAGAGGCTATATCAGTACTCAAAATACCCAACAAGCATTGCAGCATTATCCTTTAGCAGAGATGGCCGTCTGTTGGCTGTGGCATCCAGTTATACATATGAAGAGGGAGATAAGCTACACGAACCAGACGCCATCTTTGTGCGCAGCGTAAATGAAGTCGAGGTTAAGCCAAAGCCAAAAGTGTACCCTACTCCTCCATAA 1023 0.4809 MSAIVPPVPGRELSNPPSDGISNLRFSNHSDRLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAGGDNTVRRYVFSSGKEDILGRHDAPVRCVEYSYAAGQVITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGFALSSVEGRVAMEFFDLSEAGQAKKYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTYEEGDKLHEPDAIFVRSVNEVEVKPKPKVYPTPP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00940 340 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Eupl13g00940 340 Pfam WD domain, G-beta repeat 96 127 IPR001680 GO:0005515
Eupl13g00940 340 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Eupl13g00940 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Eupl13g00940 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Eupl13g00940 340 Gene3D - 8 335 IPR015943 GO:0005515
Eupl13g00940 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Eupl13g00940 340 FunFam Mitotic checkpoint protein bub3, putative 7 334 - -
Eupl13g00940 340 SMART WD40_4 49 86 IPR001680 GO:0005515
Eupl13g00940 340 SMART WD40_4 88 127 IPR001680 GO:0005515
Eupl13g00940 340 SMART WD40_4 135 171 IPR001680 GO:0005515
Eupl13g00940 340 SMART WD40_4 228 270 IPR001680 GO:0005515
Eupl13g00940 340 SMART WD40_4 6 46 IPR001680 GO:0005515
Eupl13g00940 340 PANTHER MRNA EXPORT FACTOR AND BUB3 12 326 - -
Eupl13g00940 340 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00940 Eupl-Chr13 14125376 14138911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00940 95 331 U-box Gene Family AT2G33340 24.691 3.43e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00940 K02180 - ming:122090646 649.047