Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00937 ATGGCTCTCGAAGCTCTGAATTCCCCCTCCACAGCCACTCCTTCCTTTCCCTACGACGACGTCGAACTCCACTATCTTGAACCGTGGATGAAGCGGAAGCGCTCCAAGCGTCACCGTCTCGAGAACCCTCCCACTCCCACAGAAGAAGAGTATCTGGCTCTCTGTCTTGTTATGCTCGCTCGTGGCGGTGCCACTGCTGGTGGAACTGGAACCTTTGTTTCACAACGGAATTATTCCCCTCCTCCACCACCGACGCTGAAGCTCAACTACAAGTGTACTGTCTGCAACAAAGCCTTCGCGTCTTACCAAGCCCTAGGTGGACACAAGGCGAGTCACCGAAAACTCGCTGGAGCATCCGAGGATCATTCCACAACTACCACCATCACCACAACAACAACTAACAGCACAACCGTCAATCCAGGTGGTAGGACCCACGAGTGCTCTGTTTGCCACAAATCTTTTCCATCCGGACAAGCCTTGGGTGGACACAAGCGCTGTCACTATGACGGTGGAAGTAGCGGTGTTACCACATCTGATGGCGTGGGTTCGAGTCTAAGCCACCGAGATTTCGACTTGAATTTACCGGCTTTGCCTGAATTCTGGCCGGGTCTTGGCGTTGATGGTGTCCGGAATTGTCAGATTTCCGGGGATGAGGAAGTGGAGAGCCCTCTACCGATGAAGAAGCCACGTCTGCTGATTCCGGCCTAG 708 0.5381 MALEALNSPSTATPSFPYDDVELHYLEPWMKRKRSKRHRLENPPTPTEEEYLALCLVMLARGGATAGGTGTFVSQRNYSPPPPPTLKLNYKCTVCNKAFASYQALGGHKASHRKLAGASEDHSTTTTITTTTTNSTTVNPGGRTHECSVCHKSFPSGQALGGHKRCHYDGGSSGVTTSDGVGSSLSHRDFDLNLPALPEFWPGLGVDGVRNCQISGDEEVESPLPMKKPRLLIPA* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00937 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 200 IPR044653 GO:0003700
Eupl13g00937 235 MobiDBLite consensus disorder prediction 116 142 - -
Eupl13g00937 235 Pfam C2H2-type zinc finger 145 169 - -
Eupl13g00937 235 Pfam C2H2-type zinc finger 90 114 - -
Eupl13g00937 235 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Eupl13g00937 235 Gene3D Classic Zinc Finger 88 167 - -
Eupl13g00937 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
Eupl13g00937 235 MobiDBLite consensus disorder prediction 120 142 - -
Eupl13g00937 235 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Eupl13g00937 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Eupl13g00937 235 SUPERFAMILY beta-beta-alpha zinc fingers 90 167 IPR036236 -
Eupl13g00937 235 SMART c2h2final6 145 167 IPR013087 -
Eupl13g00937 235 SMART c2h2final6 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00937 Eupl-Chr13 14062736 14064013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00937 1 235 C2H2 Transcription Factor Family AT1G27730 48.810 1.22e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g00937 zf-C2H2_6 5.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00937 - - nnu:104611626 314.694