Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00918 ATGGCAACTCAAGCTGCCCAGCAGAACGCTAATAAGATATATGGTATTGAGGGATCAAAAAATCCAGTGGAAAAGAATAGGCACAGATCCTCCAGCTCTCTGGCAGGCTGCTCCAATGATTCCAACGAAGAGCACTCCCCAACCAGAGGCCCATTCCGCCGGTCGTCCTCCTTGTCCTTCTCTGCAGAATTTGCACAGGACGCTGCATTGGAAGCAACACCGAATGAGTCTCTGAAGCTATTGCCAAGCCAAAAGGACATAAAATATCCAATAGAAGATGAGAAGAGTTTGGCCACCCTGAAGACCCAACGGAATGGCCGGGGTGTTCCTTGGCAGTGGTGGAGGATTCGTAAGGGAATTAGAACAAGCAAAATGATCAGACGTTCCACATATAATCAGAGAGCAGCTTCAAAAGGCAAACATTTGCAGGAGCAAGTCTTATTACCGAGAGACAGCATCAATTCGATACACCAGGATGCTGTCACTGACTTCAGCTTCAATTCTGCTTGCAGCAGGGACAAAATAAGCCATGGAAAAGTGCAGTTTCACTCAAGTCTGAGTCAAAAGTATCAGCCCAAGCTTTTTCAAGACATTACTGGGCATGAAATCATCGTCAAGGCCCTCTATAATGCTGTCCAGAAGGGGAAGGTTGCACCTCTCTATCTCTTCCATGGACCCAGTGGCACAGGGAAGACATCCACTGCTAGAATATTTGCCATGGCTTTGAACTGTGAATCAACTTCACACACCAAACCCTGTTGGAGTTGCAAAGGCTGCTCCAGAAGCTTGTATATCATGGAGTTGTGCACTGGGAGTAGAATATCTGGTTTTGAAAGGATCAAGACACTTCTCCAGAGCACCAAATTCACACAGACACTCTCTGGCTTCAAGGTCTTCATCATTGAGGAATGCCATTCACTCACAGCGGAAGCATGGGAAGAAATTTTGGGCATAGTGGAGGGGGGAAATGACTCAACTAAGGTATTTGTCATGATCACGGAGGACGCAAACATGGTGCCTAGAGCTATATCATCGAGATGCCAGAAATTCTGTTTCCCAAAGCTCAAAGACATGGATATCATCCTCAAGCTAGCAAGAATCGTCGCCCAAGAAGACATAGAGATTGATAGGGATGCACTGAAATTAATAATTTCCAAGGCAGAGGGGTCCTTGAGAGAAGCCGAGAACATATTGGATCAGTTAGCCCTACTGGGATCAAGAATTACAAGTTCCATAGTTCAACAGATTGTGGGTACTGGTTTCACTTCACAATCTTCTTGA 1281 0.4582 MATQAAQQNANKIYGIEGSKNPVEKNRHRSSSSLAGCSNDSNEEHSPTRGPFRRSSSLSFSAEFAQDAALEATPNESLKLLPSQKDIKYPIEDEKSLATLKTQRNGRGVPWQWWRIRKGIRTSKMIRRSTYNQRAASKGKHLQEQVLLPRDSINSIHQDAVTDFSFNSACSRDKISHGKVQFHSSLSQKYQPKLFQDITGHEIIVKALYNAVQKGKVAPLYLFHGPSGTGKTSTARIFAMALNCESTSHTKPCWSCKGCSRSLYIMELCTGSRISGFERIKTLLQSTKFTQTLSGFKVFIIEECHSLTAEAWEEILGIVEGGNDSTKVFVMITEDANMVPRAISSRCQKFCFPKLKDMDIILKLARIVAQEDIEIDRDALKLIISKAEGSLREAENILDQLALLGSRITSSIVQQIVGTGFTSQSS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00918 426 CDD HLD_clamp_pol_III_gamma_tau 359 418 IPR045085 -
Eupl13g00918 426 CDD AAA 200 354 - -
Eupl13g00918 426 MobiDBLite consensus disorder prediction 1 15 - -
Eupl13g00918 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 402 IPR027417 -
Eupl13g00918 426 Gene3D - 357 419 - -
Eupl13g00918 426 Gene3D - 176 352 IPR027417 -
Eupl13g00918 426 FunFam DNA polymerase III subunit gamma/tau 356 418 - -
Eupl13g00918 426 MobiDBLite consensus disorder prediction 28 57 - -
Eupl13g00918 426 SMART AAA_5 217 374 IPR003593 GO:0016887
Eupl13g00918 426 Pfam DNA polymerase III, delta subunit 201 355 - -
Eupl13g00918 426 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 186 418 - -
Eupl13g00918 426 MobiDBLite consensus disorder prediction 1 57 - -
Eupl13g00918 426 Coils Coil 384 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00918 Eupl-Chr13 13741053 13742333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00918 188 419 Core DNA Replication Machinery Family AT1G21690 27.273 6.37e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00918 - - psom:113283454 420.624