Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl13g00911 | ATGGGTGCTTCTTGCTGTCGATTTAGCCAAGATAACGAAAATCAATACAAACCCATATGCTGCACATCGGGTGTTCGGATCTCTTTTCATCTGCAATCTGCCAGGAGTGGAGCTACAGCACAGTGTGCCCATAGATCAAGGAACCAAAGCTTGTCATCAGATCGAGATGTAAGACACATTCAAAGGTTGCACGATGGATACTCATCGAGGCCCCACAAGATTGAGATAATACAAACCCAAGACCAACAGTTTGCACCAGCAATTGCTGTTGGGAGTGTGAATCAAGCATATGAACCAATACATGTCCTCGAAAGTAACAATGATAAAAAAGCTTCTTCAGGTTGCAATGTTAAAACACAAGATGATGCACACAAGGAATCTAAGAGAAGTGACTCGCCTCTTCTACCCATCACCGACGATGAAGATTTCTGTCCAACCTGTCTCGATGGTTATGACAAAGAGAACCCAAAGATACTCACCAAATGCAAGCATAATTATCATTTGGCCTGCATCCTTGAATGGATGGAACGAAGCAACACTTGCCCCATGTGTGACCAGGAAATGGTCATTGACGATACATGTTGA | 585 | 0.4342 | MGASCCRFSQDNENQYKPICCTSGVRISFHLQSARSGATAQCAHRSRNQSLSSDRDVRHIQRLHDGYSSRPHKIEIIQTQDQQFAPAIAVGSVNQAYEPIHVLESNNDKKASSGCNVKTQDDAHKESKRSDSPLLPITDDEDFCPTCLDGYDKENPKILTKCKHNYHLACILEWMERSNTCPMCDQEMVIDDTC* | 195 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl13g00911 | 194 | ProSiteProfiles | Zinc finger RING-type profile. | 144 | 185 | IPR001841 | - | |
| Eupl13g00911 | 194 | Pfam | RING-H2 zinc finger domain | 141 | 184 | IPR024766 | GO:0008270 | |
| Eupl13g00911 | 194 | CDD | RING-H2_AIRP1-like | 140 | 188 | - | - | |
| Eupl13g00911 | 194 | SUPERFAMILY | RING/U-box | 139 | 190 | - | - | |
| Eupl13g00911 | 194 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 62 | 192 | - | - | |
| Eupl13g00911 | 194 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 193 | IPR013083 | - | |
| Eupl13g00911 | 194 | SMART | ring_2 | 144 | 184 | IPR001841 | - | |
| Eupl13g00911 | 194 | MobiDBLite | consensus disorder prediction | 107 | 135 | - | - | |
| Eupl13g00911 | 194 | MobiDBLite | consensus disorder prediction | 119 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl13g00911 | Eupl-Chr13 | 13684061 | 13688875 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl13g00911 | 128 | 193 | C3H Transcription Factor Family | AT5G41350 | 60.606 | 6.38e-24 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl13g00911 | - | - | psom:113356633 | 123.635 |