Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00875 ATGATTTGTCTTGTGTTTGCTCAGTCTCGTTTATACGTTGCAACCATTATCTTCTACACTTGTGTTTTGATCCCTTTCCTTCACATCAAACAGGCTCTCCTAAGCATAATTGGGATGGTCTCTGGGACATGCCAGCAGCCAATGGAGAGATTCAATATGGCGTGCCTAGAAGGAACTTGCTGTGAGCAGTTCGACGACGATCTTCCAGTAGCCAGATTCGGCGAGTTGGGGTGCATAAACGATTTGTGTTCTGTTTGCTTGAGCGAATTCGAAAGGGAAGAGGAGGTGAGCCAGCTCTCTGGGTGTGGGCATGTGTTTCATCTACGGTGCATTAAGAGTTGGCTCAGTCGGAATCGGTTTACTTGCCCGCTTTGTAGGTCGGTTTTCATAAATGCTGTAGATGTTTGCCATGGAAAATGTGGGGATCTCCAATATGAAACAAATAGAATCCACACAGGAGATTTCTAA 468 0.4551 MICLVFAQSRLYVATIIFYTCVLIPFLHIKQALLSIIGMVSGTCQQPMERFNMACLEGTCCEQFDDDLPVARFGELGCINDLCSVCLSEFEREEEVSQLSGCGHVFHLRCIKSWLSRNRFTCPLCRSVFINAVDVCHGKCGDLQYETNRIHTGDF* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00875 155 Pfam Ring finger domain 82 126 IPR001841 -
Eupl13g00875 155 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Eupl13g00875 155 PANTHER - 29 132 IPR044249 -
Eupl13g00875 155 SMART ring_2 83 125 IPR001841 -
Eupl13g00875 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 129 IPR013083 -
Eupl13g00875 155 SUPERFAMILY RING/U-box 69 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00875 Eupl-Chr13 13041264 13047936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00875 1 127 C3H Transcription Factor Family AT4G38140 32.117 2.82e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00875 - - jre:108997319 132.494