Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00862 ATGGAAGAAATGGGAGCACAGGTTGCTCGTCCCATTTTCATTCACCAGGGGCTTCCAGGTCGGTTTTGCGAAGCGCCTTCCATGGTGAAGAAGCGCGATCTGCCGTGGCAAAACCCTAATTTTCAGCAACAGCAGCAACAACAGCAGCGATTCCAAAACCCAAAGAGTAGTTGGAACCCTAAGGGTTGGGATTGGGACAGTATGATGTTTGTCGCCAAACCCTCTGAAGCTGAGGTTCTGCGCCTGGGGACTGCGGCACCGGTGGTTGAGCCCGAGCGTAAAAAGAATGGGGAAGAAACCATGAAGCCTCTGGTTACGAAGAAGAGCACTGTGGATGAAGATGGTGAGAACCTTACATTAAAACTTGGCGGGAGCTTGTATTCGGCGGATGAGCCTGCGACAAGGCCCAACAAGAGAGTCCGATCTGGATCTCCAGGCGGCGGCAGCTACCCAATGTGTCAGGTCGATGACTGTAAGGGTGATCTTTCGAACGCGAAGGACTATCACCGGCGACATAAAGTGTGTGAGCATCACAGCAAGACCACCAAAGCACTTGTGGGGAAGCAGATGCAGAGGTTCTGCCAGCAGTGTAGCAGGTTTCACCCCCTTTCTGAGTTTGATGAGGGGAAGAGAAGCTGTAGGCGGAGGCTTGCTGGTCACAACCGGCGAAGAAGGAAAACCCAAATAGAAGACGTTTCATCGCGGCTGTTACTCCCTGGAAACCAGGAGAACACTGGCAGTGGAAATTTGGATGTCGTCAATCTGTTGACCATTTTAGCTCGTCTGCAAGGGAATAATGCAGACAAACCTACCAATGCCACATTAATACCTGATAGAAACCGGCTAATCCAGATTCTTAGTAAGATAAATTCATTACCTGTCACTGCAAACTCAGCCACGAGGTTGCCTGTACCCGGGGGATTCGATCTGAATGTCTCACAAGAAATTTCTTCGCTACACCCTAACAAAATTAACGGAAACACATCTGCTCCATCAACTATGGACTTGCTTGCGGTTCTTTCAGCTGCACTGGGGGCATCTTCTGCTGATACCCTTGCAATTCTGTCTCAAAGAAGCAGTCACAGCAGTGATGATGATAAAACAAAGTTGATCTGCCAGGACCAGGCTGCAGGTTTCAATTTACAAAAGAAACCTGTTACAGGGTTTCTGTCAGTTGGAGGGGAAAGAACTAGTACTATTTTCCAGTCTCCGGTAGAAGTTTCCGATTGCCAGGTTCCAGAAGCCCGACCAATTTTGCCTCTGCAGCTGTTTGGTTCCTCCCCTGAGGATGACAGCCCACCAAAACTGGGATCTACCAGGAAATATTTCTCCTCCGAGAGTAGTAATCCCATGGAAGAGAGATCTCCTTCATCTTCACCTCCGGTTGCGCAAAAACTGTTCCCTCTGCAAACTGCATCAGAAATTATGAAACATGAGAGTATGTCGACCAGTGGAGAGGATAATGGAACAGTTGAGGCCAGTACGACTCGTGGTTGGAGCTCACCTCTGGAACTTTTTAAAGGGCCAAATGGACGAGTTGGAAGTACAGTTCAAAATCTTCCATACCAAGCAGGCTACACTTCTTCATCTGGTTCAGATCACTCCCCTTCTAGTTCAAATTCTGATGCTCAGGATCGGACGGGGCGTATAATTTTCAAACTCTTTGACAAGGATCCTAGTAATCTCCCTGGGACCCTACGGACACAGATCTTAAATTGGCTTTCCCACATTCCATCAGAAATGGAGAGCTACATTAGGCCTGGTTGTGTGGTTCTATCAATTTATATGTCAATGCCTAATACCGCGTGGGAGCAACTTCAAGAAGACCTTCTTCAGCGCGTAAATTTTCTTGTTCAAGATTCGGATTCAGATTTTTGGAGAAATGGAAGGTTCTTGGTTCATACAGACAGGCAACTAGCATCACATAAAGACGGCAAGATCCGTCTTTGCAAATCTTGGAGAACATGGAGTGCTCCGGAGCTAGTCTCTGTGTCACCTCTCGCAGTTGTGGGTGGCCAGGAGACCTCTCTTGTGTTGAGAGGTCGAAATCTGACTGTACCAGGCACCAAAATTCATTGCACATATATGGGAGGGTACATGTCAAAGGAAGTTCATGGATCGGTGGGCACTGTATATGATGATGCAAGCTCGGAAAGTTTCGATTTTCCTGGTGCAGCTCCTAGTGTCTTGGGTCGCTGTTTTATAGAGGTCGATAATGGTTTCAAAGGAAACAGTTTCCCTATTATAATTGCTGATGCTGCGATCTGCCGAGAATTGAGACTCCTTGAATCTGAGTTTGAGGAAGATGCTGGAATGGGTGATATCATTGCAGATGACCAGATTCAGGATTTTGGAAGGCCGAGGTCAAGGGAAGATGTCCTACACTTCCTAAATGAACTCGGATGGCTGTTCCAAAGGAGAGACACCCTTTCCAGGCCCGACGTTCCCGATTTCTCTCATACCCGGTTCAAATTTCTCTTCACATTTTCGGTTGAAAGGGACTGGTGTGCTTTGGTTAAAACACTACTGGACATACTTGTGGAAAGAAACTGGGGAAATGATGGGCTATCAATGGACTCCTTGGAGACACTGTCAGAGATTCACCTCTTGAACAGGGCCGTGAAGAGGAAGTGCAGGAACATGGTTGACTTGCTCATTCATTATTCTTTAACTAGCAGTACTGATGCCTCCAAGAAGTACCTTTTCCCTCCAAATCAAGCGGGCCCCAGTGGTATCACACCTCTCCATTTAGCTGCTTGTACACATGATTCAGAGGAACTAGTGGACGCCTTGACAAATGATCCACAAGAGATTGGGTTGACCTGCTGGAAATCTCTACTGGATTCAAATGGGCAGTCTCCATATGCTTATGCTTCAGTGAGGAACAACCATTCTTACAACAGGCTGGTGGCTCGGAAGCTTGCTGACAGGAAACATGATCAGGTCTCTATACCAATTGGGGAAGAGACCTCTTTAGATCAGTCGCGGATACTAGCAGAGCAGACCGAAAGGCCGAGTCGCCAATCATGGCAAGGGCAAAAGTCGTGTGCCAGGTGTGCAGTTGTTGCGACAAGACGTTATAAGCGGATGCCAGGTGCTCAAGGGTTGCTTCATCGCCCTTACGTCCATTCAATGCTTGCTATTGCTGCCGTCTGTGTGTGCGTATGCCTGTTCCTCCGAGGCTCCCCAGACATTGGGAGTGTTGCACCATTCAAGTGGGAGAATTTGGGTTTTGGCCCGAGTTAA 3246 0.4791 MEEMGAQVARPIFIHQGLPGRFCEAPSMVKKRDLPWQNPNFQQQQQQQQRFQNPKSSWNPKGWDWDSMMFVAKPSEAEVLRLGTAAPVVEPERKKNGEETMKPLVTKKSTVDEDGENLTLKLGGSLYSADEPATRPNKRVRSGSPGGGSYPMCQVDDCKGDLSNAKDYHRRHKVCEHHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQIEDVSSRLLLPGNQENTGSGNLDVVNLLTILARLQGNNADKPTNATLIPDRNRLIQILSKINSLPVTANSATRLPVPGGFDLNVSQEISSLHPNKINGNTSAPSTMDLLAVLSAALGASSADTLAILSQRSSHSSDDDKTKLICQDQAAGFNLQKKPVTGFLSVGGERTSTIFQSPVEVSDCQVPEARPILPLQLFGSSPEDDSPPKLGSTRKYFSSESSNPMEERSPSSSPPVAQKLFPLQTASEIMKHESMSTSGEDNGTVEASTTRGWSSPLELFKGPNGRVGSTVQNLPYQAGYTSSSGSDHSPSSSNSDAQDRTGRIIFKLFDKDPSNLPGTLRTQILNWLSHIPSEMESYIRPGCVVLSIYMSMPNTAWEQLQEDLLQRVNFLVQDSDSDFWRNGRFLVHTDRQLASHKDGKIRLCKSWRTWSAPELVSVSPLAVVGGQETSLVLRGRNLTVPGTKIHCTYMGGYMSKEVHGSVGTVYDDASSESFDFPGAAPSVLGRCFIEVDNGFKGNSFPIIIADAAICRELRLLESEFEEDAGMGDIIADDQIQDFGRPRSREDVLHFLNELGWLFQRRDTLSRPDVPDFSHTRFKFLFTFSVERDWCALVKTLLDILVERNWGNDGLSMDSLETLSEIHLLNRAVKRKCRNMVDLLIHYSLTSSTDASKKYLFPPNQAGPSGITPLHLAACTHDSEELVDALTNDPQEIGLTCWKSLLDSNGQSPYAYASVRNNHSYNRLVARKLADRKHDQVSIPIGEETSLDQSRILAEQTERPSRQSWQGQKSCARCAVVATRRYKRMPGAQGLLHRPYVHSMLAIAAVCVCVCLFLRGSPDIGSVAPFKWENLGFGPS* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 421 463 - -
Eupl13g00862 1081 Pfam SBP domain 153 226 IPR004333 GO:0003677
Eupl13g00862 1081 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Eupl13g00862 1081 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 913 IPR044817 GO:0003677
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 438 463 - -
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 479 544 - -
Eupl13g00862 1081 FunFam Squamosa promoter-binding-like protein 14 145 214 - -
Eupl13g00862 1081 SUPERFAMILY Ankyrin repeat 870 972 IPR036770 -
Eupl13g00862 1081 SUPERFAMILY SBT domain 151 230 IPR036893 GO:0003677|GO:0005634
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 512 544 - -
Eupl13g00862 1081 Gene3D - 827 999 IPR036770 -
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 40 59 - -
Eupl13g00862 1081 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 127 148 - -
Eupl13g00862 1081 MobiDBLite consensus disorder prediction 479 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00862 Eupl-Chr13 12900553 12906063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00862 1 1079 SBP-box Gene Family AT1G20980 53.199 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl13g00862 SBP 3.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00862 - - nnu:104597228 1586.24