Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00848 ATGAAGACAATAAGGACGACTGAGACGATGGACATTCCAGAGGGGGTGAAGATTAAGGTTAAGGCGAAGCAGATCGAAGTGGAGGGCCCACGTGGGAAGCTCACCAGGAACTTCAAGCACCTCAATCTCGACTTCGAACTCATCAACGATGAAGGAAAGAAGAAGCTCAAGATCGATTCCTGGTTCGGATCCAAGAAGACCACTGCCTCGATCCGTACCGCCCTCACCCACGTTAGAAACCTCATCACCGGTGTCACCAAGGGCTACCGTTACAAGATGCGCTTCGTCTACGCTCACTTTCCGATCAATGCGAGCATCGCCAATTCCAATCAGAGTATCGAAATTCGTAACTTCCTCGGCGAGAAAAAGGTTCGGAAAGTGGATATGCTTGAGGGTGTGAATGTTGTTCGATCCGATAAGGTTAAGGATGAGCTCATATTGGATGGAAATGATATTGAACTCGTGTCTCGATCAGCAGCCTTAATAAACCAGAAATGCCATGTTAAAAACAAAGACATAAGGAAGTTTCTCGATGGAATATATGTCAGCGAGAGGGGAACAATGGCTGAGGACGAGTGA 579 0.4732 MKTIRTTETMDIPEGVKIKVKAKQIEVEGPRGKLTRNFKHLNLDFELINDEGKKKLKIDSWFGSKKTTASIRTALTHVRNLITGVTKGYRYKMRFVYAHFPINASIANSNQSIEIRNFLGEKKVRKVDMLEGVNVVRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSERGTMAEDE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00848 192 FunFam 60S ribosomal protein L9 1 88 - -
Eupl13g00848 192 ProSitePatterns Ribosomal protein L6 signature 2. 164 185 IPR002359 GO:0003735|GO:0005840|GO:0006412
Eupl13g00848 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 188 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 Gene3D - 1 88 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 Gene3D - 89 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 FunFam 60S ribosomal protein L9 89 192 - -
Eupl13g00848 192 SUPERFAMILY Ribosomal protein L6 89 185 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 SUPERFAMILY Ribosomal protein L6 1 88 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 Pfam Ribosomal protein L6 101 179 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 Pfam Ribosomal protein L6 12 88 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Eupl13g00848 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 188 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00848 Eupl-Chr13 12696249 12698659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00848 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 77.835 5.61e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00848 K02940 - aew:130766714 340.117