Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00847 ATGGCTGAGGTGAAACGTAAATCTAAGAGAGACGATTCAGAGAGGAAGGAGGATTCCAAGAGAGGCAATCGAGATCGTGATCGAGAGAGGGAGAACGATAAGGAGAGAAATGGAGAGAGGTACAAGGATAGGGAAAAGGTTAGGAATCGTGATTTGGAGAAAAAAGACAGGGAGAACGAGAGTACGAAGTTGGAGCGAGAGAAGAGCGTCGACGGTAAGTGTAGAGAGAAACACAGAGATAGAGATTCTAGGTATAAGGAGAGGGAGAAGGATCGAACACGAAGTCGAGAAGAGGAGAGAGAAAGAGCGAAAGAAAAGGCCAAAGGTAGAGAGAGGGAAAGGGACAGAGAAGATAAAGAGAAGGAGAGAGGTCGAGAAGATAGAGAGAGGGAAGGGGAGAGAGAAAAGGAGGATAGGGAGAAGCAGAGAGAGAGGGAGAGAGGTCGAGAAGATAGAGAGAGGGAAGGGGAGAGAGAAAAGGAGGATAGGGAGAAGCAGAGAGAGAGGGAGAGGGAGCGAGCGAGAGAGAGGGAAAAGGAAAGAGAAGGAGAGGAGAGAGAGCGTGAGAGGGAAGATAGAGGTAGGGAGAGGGAGAGGGAGAGGGAGAAGCGTCGTGACTTGGATAGAGCTGATGATGAGAGAGACCAGGATGGGAAGCGGCGAAAGAGAGAGGAGGATTACAGGGGGAGAGAATGGGAGCGGAGCAGCAGATCCGATAGGCACAGGGATGATAATGACGATGGCAGAAGGAAAAAGAGCGAGGAGGATTCAGATAACAAAGAGAAGAGAACCCGAGAAGAAGATTTAGAGGAAGAGCAGCGGAAACTGGATGAGGAAATGGATAAACGGAGGAGGAGAGTTCAGGAATGGCAGGAGTTGCGAAGAAATAAGGAAGAATCAGATAGAGAAAAGCTGGGCGAAGTAAGTGCTGACAAACCAAAGTCTGGTAAGAATTGGACCTTAGAAGGAGAGTCCGATGACGAAGAAGCTGTACCAACGGAAAACACGGATAGTGGTATGGACATGGACGAAGAGGCTAAGCCTGCTGTTGAAGGTCGAGATGCCATGGTGGTAGATTATGATGACAGAACTACTGTACCTGTTACGCAAAATGGAGGCGAAGGTGCAAATGGGGAGGAGGAAATTGATCCGTTAGACGCTTTCATGAATTCTATGGTGCTGCCTGAAGCTGAGATGCTGAGCAATGAAGAGAGTTCTCCAAATGCCAACGATAACATATCCGACCTGAAAAAGAAGGATCAGAAAGGTGGTCAAAGTAATGAGGATCCACAAAGGAAAGGTATGAATAAATCCATGGGAAGAATAATGCCTGGTGAGGATTCTGATTCAGATTATGGGGATCTTGAGGATGATGAAGATCCACTAGAAGACGAAAATGATGATGAGTTCATGAAAAGGGTGAAGAAGACTAAAGCTGAGAAACTAGCGCTAGTTGACCACTCAAAGATCCAGTACCCTACAGTCCGGAAAAATTTCTATATTGAAGTGAAGGAGATATCAAGGATGATACCGGAGGAGGTCACAGCTTACAGAAAACAGCTTGAATTGAAGATACATGGGAAGGATGTGCCAAAACCTGTTAAGACATGGATCCAGACTGGATTGGCTAGTAAAATCTTTGATACAATAAAGAAGCTTGGTTATGAAAGGCCAATGTCCATCCAAGCTCAGGCACTGCCTATAATTATGAGTGGTCGAGACTGCATTGGAATAGCAAAAACTGGCTCTGGTAAAACCCTAGCTTTTGTTTTGCCAATGCTGAGGCATATCAAGGACCAGCCACCTGTGGTGCCTGGAGATGGGCCAATTGGGCTTATAATGGCACCCACTAGAGAGCTTGTCCAGCAGATCCACGGTGATATTAAGAAGTTTGCCAAGGTGATGGGTGTTAATTGTGTTCCTGTCTACGGAGGCTCTGGGGTGGCCCAACAGATCAGTGAATTAAAGCGTGGGGCTGAGATTGTTGTCTGTACTCCGGGTAGGATGATAGATGTACTTTGTACAAGTAGTGGAAAGATTACGAATCTCCGTAGAGTTACTTATCTGGTTATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAGATAACTCGAATTGTTCAAAATACTCGACCAGATCGCCAGACTGTACTCTTCTCTGCAACTTTCCCTCGGCAGGTTGAGATACTGGCACGCAAAGTTTTGACCAAACCCATTGAAATACAGGTTGGGGGAAGGAGTGTTGTGAACAAGGACATCACCCAGTCGGTTGAAGTGAGACCAGAAAGCGAAAGGTTTTTAAGGCTGTTAGAATTACTTGGAGAATGGAATGAGAAGGGGAAGATATTGATTTTTGTCCACTCGCAAGAGAAATGTGATTCTTTGTTCAAGGACTTGCTCAAGCACGGCTATGCTTGCCTCTCACTTCATGGGGCTAAGGATCAGACAGATCGTGAGTCCACTATTTCTGATTTCAAGAGCAATGTCTGCAATCTGTTGATTGCAACCAGTATTGCCGCCAGGGGCTTAGATGTGAAGGAGCTTGAACTGGTGATCAATTTTGATGTCCCAAACCACTATGAAGACTATGTTCATCGTGTTGGCCGGACAGGTCGAGCTGGCCGGAAAGGCTGTGCCATTACTTTTGTCTCAGAGGAAGACGCAAGATATGCTCCTGATCTTGTAAAAGCCTTGGAACTCTCCGAGCAAGCTGTTCCCGAAGATCTGAAGGTTGTTGCTAATGGGTTCATGGCTAAAGTGAATCAGGGACTTGAGCGCGCTCATGGGACTGGTTACGGTGGAAGTGGTTTTAAGTTTAATGAAGAGGAGGATGAAGTGAGGAAAGCTGCAAAGAAAGCCCAGGCAAGAGAATATGGCTTCGAGGAAGACAAATCAGATTCAGACTCTGAAGATGAAGGGATTAGGAAGGCAGGAGGCGATATGTCTCAGCAAGCTGCCCTTGCTCAGGCTATAGCAGCAGCCTCCAAGGCAAGTAGTATGGGTTCGATGCCAGCGCCCGTCTCAGGAGCCCAATTGCTTCCAAATGGAGGACTATCCGTAGCTCTGCCCAGTGTCCCGGGTCTATCTATTCCAGGTACGGCAGCCGTGTTTCCTGGTGCTGCCAATGATGGGGCAGCTCGGGCAGCGGCATTGGCAGCTGCCATAAACTTGCAGCATAACCTTGCGAAAATCCAAGCCGATGCCATGCCTGAACACTACGAAGCAGAGTTTGAGATCAACGATTTCCCTCAGAATGCTCGTTGGAAGGTGACCCACAAGGAAACTTTGGGTCCAATCTCGGATTGGACTGGGGCTGCAATTACTACCAGGGGACAGTATTATCCGCCAGGTAAGATCCTAGGACCAGGAGAATCCAAGCTCTACCTGTTCATCGAGGGCCCTACTGAATCATCTGTGAAGAAAGCAAAAACCGAAGTGAAACGTGTTCTGGAGGACATCACGAAACAGTCATTTTCGCTTCCGGGTACGGCCCAACCAGGCAAGTACTCTGTTCTGTGA 3528 0.4739 MAEVKRKSKRDDSERKEDSKRGNRDRDRERENDKERNGERYKDREKVRNRDLEKKDRENESTKLEREKSVDGKCREKHRDRDSRYKEREKDRTRSREEERERAKEKAKGRERERDREDKEKERGREDREREGEREKEDREKQRERERGREDREREGEREKEDREKQRERERERAREREKEREGEEREREREDRGREREREREKRRDLDRADDERDQDGKRRKREEDYRGREWERSSRSDRHRDDNDDGRRKKSEEDSDNKEKRTREEDLEEEQRKLDEEMDKRRRRVQEWQELRRNKEESDREKLGEVSADKPKSGKNWTLEGESDDEEAVPTENTDSGMDMDEEAKPAVEGRDAMVVDYDDRTTVPVTQNGGEGANGEEEIDPLDAFMNSMVLPEAEMLSNEESSPNANDNISDLKKKDQKGGQSNEDPQRKGMNKSMGRIMPGEDSDSDYGDLEDDEDPLEDENDDEFMKRVKKTKAEKLALVDHSKIQYPTVRKNFYIEVKEISRMIPEEVTAYRKQLELKIHGKDVPKPVKTWIQTGLASKIFDTIKKLGYERPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVPGDGPIGLIMAPTRELVQQIHGDIKKFAKVMGVNCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDVLCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPIEIQVGGRSVVNKDITQSVEVRPESERFLRLLELLGEWNEKGKILIFVHSQEKCDSLFKDLLKHGYACLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFVSEEDARYAPDLVKALELSEQAVPEDLKVVANGFMAKVNQGLERAHGTGYGGSGFKFNEEEDEVRKAAKKAQAREYGFEEDKSDSDSEDEGIRKAGGDMSQQAALAQAIAAASKASSMGSMPAPVSGAQLLPNGGLSVALPSVPGLSIPGTAAVFPGAANDGAARAAALAAAINLQHNLAKIQADAMPEHYEAEFEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQYYPPGKILGPGESKLYLFIEGPTESSVKKAKTEVKRVLEDITKQSFSLPGTAQPGKYSVL* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00847 1175 Coils Coil 125 145 - -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 951 980 - -
Eupl13g00847 1175 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 535 563 IPR014014 GO:0003724
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 1 468 - -
Eupl13g00847 1175 PANTHER RNA HELICASE 473 955 - -
Eupl13g00847 1175 Pfam DEAD/DEAH box helicase 560 731 IPR011545 GO:0003676|GO:0005524
Eupl13g00847 1175 Coils Coil 252 293 - -
Eupl13g00847 1175 ProSiteProfiles R domain profile. 160 177 IPR017888 -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 449 466 - -
Eupl13g00847 1175 CDD SF2_C_DEAD 756 886 - -
Eupl13g00847 1175 CDD KH-I_AtRH42_like 1072 1174 - -
Eupl13g00847 1175 Gene3D - 745 919 IPR027417 -
Eupl13g00847 1175 SMART helicmild6 796 877 IPR001650 -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 1 324 - -
Eupl13g00847 1175 CDD DEADc_DDX46 524 745 - -
Eupl13g00847 1175 Pfam Helicase conserved C-terminal domain 769 877 IPR001650 -
Eupl13g00847 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 566 744 IPR014001 -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 951 983 - -
Eupl13g00847 1175 Coils Coil 149 187 - -
Eupl13g00847 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 893 IPR027417 -
Eupl13g00847 1175 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 690 698 IPR000629 -
Eupl13g00847 1175 SMART ultradead3 554 759 IPR014001 -
Eupl13g00847 1175 FunFam probable ATP-dependent RNA helicase DDX17 497 746 - -
Eupl13g00847 1175 Coils Coil 86 120 - -
Eupl13g00847 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 771 916 IPR001650 -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 413 427 - -
Eupl13g00847 1175 FunFam ATP-dependent RNA helicase RhlB 747 919 - -
Eupl13g00847 1175 Gene3D - 488 744 IPR027417 -
Eupl13g00847 1175 MobiDBLite consensus disorder prediction 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00847 Eupl-Chr13 12671684 12676192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00847 533 897 Eukaryotic Initiation Factors Gene Family AT3G19760 32.514 4.46e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00847 K12811 - ming:122084089 1475.69