Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00844 ATGAGCGAGATGAAGGATGATGAAGAAATGGTGGGACAAGATTCGTCGGATGATTCGGAAAATGAGCAACTGATTGATACAGAAATTGAACAAGAAGAATCGCCTCACTTGGCGGAAAACCAAAATTCTATTGAAAATGTTGAATCACTGCTGCCTGAGGCCTCTGAGGATAGTAAGATCGTTAAATTGCCTAAAGAGGCTCATTTACGTGAAGACCAAGAAGGTTCCATTGAACCTCATTCTGAACTCCCCACTGATGGCAACACTGATGCTGATGCCAATGGACTAGATAAAAGTATAGATGATAGTGATGATGATACGGGTCCCACAAATGAGCCTGAAGCTGCTATGCTCAGTGAGGCTGTTTCGGAGACAAGAGCTGAAGACAAGAATGGGGAGGAATTGAAGAATGTGGCGGTGGTACTTCCCACTTCCAAAGAAAATGGTGTTAAGGAGGAGGTGTTGACGAAACAGGAGGTTGCTGTGGAAGAGTACCCAGTTACTATGGAGGGCTCGAACCAGTCATTTCTTGCAGAACCACAGATGGTTGAGGGTGACGAGTCGGGAACTGAAGAGGAGCAAGCTGCGTTCATGAAGGAACTGGAGAATTTCTTCAGAGAGAGGAGCATGGAATTCAAACCCCCAAAGTTCTATGGAGAGGGATTAAACTGCCTCAAGTTATGGAGAGCTGTGACTAGATTGGGTGGCTATGACCAGGTGACAACATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACCTGTACTACTGTCTCTTGGTCATTCCGATGCTTCTATGAGAAGGCACTTCTTGAATACGAAAGGCATAAAATGCGTGGTGGTGAGCTCCGTGTTTCTGCTACTTCCCTCACAGAGCCCTTGAATGTTGACAATCAGGTGGGTGGTCATCAAGCGTCAGGATCAGGTAGGGCACGAAGGGATGCTGCTGCTCGTGCTATGCAGGGGTGGCACTCTCAGCGTCTTCTTGGTAATGGTGAGGTTGGTGACCCTATTATTAAGGATAAGAACTCCATCTCTATGCCAAAGCGTGAAAAACAGCTTAAAAGCGTTGGTGTACTTAAACGTAAAAAGCCATCTAACCTGGAGCGTGCTGTCAAAGCTGCACGCACTATTACTAAAGCAGCGAAGCCACAAATGGACACAATGGTTGTTGATATTGGGCCCTCCGCTGATTGGGTGAAGATTAATGTTCGGAGAACTAAGGATTGCTTTGAGGTCTATGCTTTAGTTCCCGGGCTTCTGCGCGAGGAAGTCCGTGTTCAGTCAGATCCAGCTGGCCGCTTAGTTATATCTGGTGAGCCAGAGCAGCCTGATAATCCGTGGGGTGTCACACCCTTCAAAAAGGTTATCAGCTTACCATCGAGAATTGATCCGCATCAGACATCTGCTGTTGTCACCTTGCATGGCCAGTTATTTGTACGTGTGCCTTTCGAGCAGTCAGATTTGTAG 1482 0.4717 MSEMKDDEEMVGQDSSDDSENEQLIDTEIEQEESPHLAENQNSIENVESLLPEASEDSKIVKLPKEAHLREDQEGSIEPHSELPTDGNTDADANGLDKSIDDSDDDTGPTNEPEAAMLSEAVSETRAEDKNGEELKNVAVVLPTSKENGVKEEVLTKQEVAVEEYPVTMEGSNQSFLAEPQMVEGDESGTEEEQAAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDQVTTCKLWRQVGESFKPPKTCTTVSWSFRCFYEKALLEYERHKMRGGELRVSATSLTEPLNVDNQVGGHQASGSGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDKNSISMPKREKQLKSVGVLKRKKPSNLERAVKAARTITKAAKPQMDTMVVDIGPSADWVKINVRRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEQPDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00844 493 FunFam AT-rich interactive domain-containing protein 3 384 492 - -
Eupl13g00844 493 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 397 493 IPR002068 -
Eupl13g00844 493 SMART bright_3 192 283 IPR001606 GO:0003677
Eupl13g00844 493 SMART ARID_2 188 278 - -
Eupl13g00844 493 SUPERFAMILY ARID-like 187 286 IPR036431 GO:0003677
Eupl13g00844 493 MobiDBLite consensus disorder prediction 58 79 - -
Eupl13g00844 493 CDD ARID 193 278 - -
Eupl13g00844 493 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 18 491 IPR045147 GO:0006357
Eupl13g00844 493 CDD ACD_sHsps-like 407 487 - -
Eupl13g00844 493 Gene3D - 170 292 IPR036431 GO:0003677
Eupl13g00844 493 Gene3D - 376 492 IPR008978 -
Eupl13g00844 493 Pfam ARID/BRIGHT DNA binding domain 194 278 IPR001606 GO:0003677
Eupl13g00844 493 ProSiteProfiles ARID domain profile. 191 282 IPR001606 GO:0003677
Eupl13g00844 493 MobiDBLite consensus disorder prediction 10 28 - -
Eupl13g00844 493 Pfam Hsp20/alpha crystallin family 409 490 IPR002068 -
Eupl13g00844 493 FunFam AT-rich interactive domain-containing protein 3 191 290 - -
Eupl13g00844 493 SUPERFAMILY HSP20-like chaperones 400 488 IPR008978 -
Eupl13g00844 493 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00844 Eupl-Chr13 12619717 12634204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00844 176 490 ARID Transcription Factor Family AT1G76510 63.175 2.08e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl13g00844 HSP20 3e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00844 - - nnu:104606869 620.157