Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00838 ATGGCTTATCAATCGATTCCGGGTTCTGGGTCGGGGTCGGGATCAAGTTCGAATTCCGGCTTTCAATTTTTGAATCCCTCTTTTGGGGATACCACTCACACCAAGGTCTTCGTCGGGGGATTGGCGTGGGAGACGCAGGACGAGACAATGCATCGTTACTTCAAGCAATTCGGAGATATCCTCGAAGCAGTCGTGATAACTGATAAGAATACGGGGAGATCAAAAGGCTACGGTTTTGTGACTTTCCGTGATCCCGAATCTGCAAGGAGAGCATGTGTGGATCCAAGTCCTGTTATTGACGGTAGGCGGGCAAATTGTAATTTGGCTTCACTTGGACGGCCTCGGCCACCTCCACCTTATGGCCGTCTGAGGTCAGTAACCCCCTACTTTGGAAGTGTGCAAGGCCCTCGGGGAGCTTACATCGGAAGCCCTACCTACCACCAACCTGTTTCTTACAGCTACCAACAAGGATTTGCATATCCTCCATATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGGGTGTCTACAATCCTTACGTGGGTCAGCAATACCTTCAGATGTATGGGGTACCGGGGACTGTTAACTCAGCTATTTACCCATTTGGGCAACTGGGTCAACCTCTTCCTGGAAATCATGGCTATACAGCAGTTCAGAGTTATGCAATGCCAGGTCATCACATCATGCAATTTAGTGGGCCCAATGTCAGTGGAGTAACTGCAGCACCTATTCCCGCGATTCAAGCACCATATCCCACAGGGGCACCTGTTCCAGCACAGCCACAGTTTATAGTTCCTGCTCATTCTCCTCAGTTCACACAGGGTAGCGGTTCGGACCAAACGGCAGGTATCCTTATATTCCAGCAGGACTAA 879 0.4994 MAYQSIPGSGSGSGSSSNSGFQFLNPSFGDTTHTKVFVGGLAWETQDETMHRYFKQFGDILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPSPVIDGRRANCNLASLGRPRPPPPYGRLRSVTPYFGSVQGPRGAYIGSPTYHQPVSYSYQQGFAYPPYGYTAYGPEYVYPQGVYNPYVGQQYLQMYGVPGTVNSAIYPFGQLGQPLPGNHGYTAVQSYAMPGHHIMQFSGPNVSGVTAAPIPAIQAPYPTGAPVPAQPQFIVPAHSPQFTQGSGSDQTAGILIFQQD* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00838 292 SMART rrm1_1 35 107 IPR000504 GO:0003723
Eupl13g00838 292 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 115 - -
Eupl13g00838 292 Gene3D - 13 121 IPR012677 -
Eupl13g00838 292 PANTHER BOULE-RELATED 13 261 - -
Eupl13g00838 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Eupl13g00838 292 SUPERFAMILY RNA-binding domain, RBD 25 132 IPR035979 GO:0003676
Eupl13g00838 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 91 IPR000504 GO:0003723
Eupl13g00838 292 CDD RRM_RBM24_RBM38_like 34 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00838 Eupl-Chr13 12482890 12494231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00838 23 110 C2H2 Transcription Factor Family AT2G19380 39.773 4.37e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00838 - - msin:131222357 478.404