Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00834 ATGATGTCCGGAACTGAGCCGGGAATCATGTCGGGTAGAGAATCGTTCGGCGTCGGTCTTCAAAAAAATCCAGTCTCCTCTCAACCGTCGGGGATGCCGAACATGCGGTTAGCTTTCAGTTCCGATGGAACAGCAGTCTACAAACCAGTCACTGGAAGCTCTCCTACATACCAAGCTAGCAGTGGAGCCGGTGTTGGCGATGGCTCCGGCGGATCTATAGTCCAACATGGAATTAACATGAACATGGGCGAGCAAATGAAGCGGAAGCGAGGGAGGCCCAGGAAGTACGGGCCCGACGGCACTATGGCTCTTGCTTTGACACCGGCATCACCAGCTGTACCGCCCAGCGGATTCTCATCTTCTTCGGCAGGCTCGCCGTCGTCGCTTAAGAAGGCAAGGGGCCGACCACCTGGTTCGGGAAAGAAGCAGCAAATGGCTGCTCTGGGATCGGCGGGGATTGGATTTACACCACATGTTATCACAGTTAAAGCTGGAGAGGATGTATCATCAAAAATAATGTCATTTTCTCAGCATGGTCCACGGGCTGTTTGCATTCTTTCAGCAAATGGTGCTATATCTAATGTAACACTACGTCAAGCGGCAACATCCGGTGGAACTGTAACTTATGAGGGTCGATTTGAAATCCTGTCACTTTCTGGTTCATTTCTGCTCTCGGAGAGTGGTGGTCAGCGCAGCAGAACAGGTGGGTTGAGTGTGTCTCTAGCTGGCCCAGATGGTCGTGTTTTAGGCGGTGGTGTGGCTGGGCTTCTAACAGCGGCATCCCCTGTTCAGGTGGTCGTGGGTAGTTTTATTGCGGATGGGCGTAAAGAGTCAAAATCGATGAACCAATCGGAACCTTCCTCTGCACCATCAAGAGCCCCAGGTAGTGGGGCAGCAGGGACGGGAAGCCCACCGTCTCGGGGGACCCTGAGTGAGTCATCCGGTGGGCCTGGCAGCCCGCTCAACCAGAGTACTGGAGCCTGCAATAACAACAACTCACAAGGCATGGCAAGCATGCCGTGGAAATAG 1029 0.5364 MMSGTEPGIMSGRESFGVGLQKNPVSSQPSGMPNMRLAFSSDGTAVYKPVTGSSPTYQASSGAGVGDGSGGSIVQHGINMNMGEQMKRKRGRPRKYGPDGTMALALTPASPAVPPSGFSSSSAGSPSSLKKARGRPPGSGKKQQMAALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSMNQSEPSSAPSRAPGSGAAGTGSPPSRGTLSESSGGPGSPLNQSTGACNNNNSQGMASMPWK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00834 342 Gene3D - 157 284 - -
Eupl13g00834 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
Eupl13g00834 342 MobiDBLite consensus disorder prediction 83 146 - -
Eupl13g00834 342 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Eupl13g00834 342 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Eupl13g00834 342 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
Eupl13g00834 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 330 IPR039605 GO:0003680
Eupl13g00834 342 MobiDBLite consensus disorder prediction 302 342 - -
Eupl13g00834 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Eupl13g00834 342 MobiDBLite consensus disorder prediction 276 342 - -
Eupl13g00834 342 CDD DUF296 156 270 IPR005175 -
Eupl13g00834 342 MobiDBLite consensus disorder prediction 113 128 - -
Eupl13g00834 342 FunFam AT-hook motif nuclear-localized protein 1-like 157 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00834 Eupl-Chr13 12399292 12412343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00834 2 342 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 55.135 7.78e-100 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00834 - - nnu:104603820 491.115