Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00808 ATGAATCTTGTCTGGCTTCTACTGCTAATATCGGTTCTCTATTTTGGAGTCTTCTCAAATGGGGTTCCAAGTCCTACCATTGTGACGATTGGAGCTATTTTGAACTTTGATTCTATCAATGGGAGAGTTTCAAAGATTGCCATGGAAGCCGCTGTTGAAGACGTGAATTCTGATCCCAGTATTCTCGGTGGAATCAAACTTCATCTCTCAATGCACAACTCCAACAACACCGGAATACTCGGCGTTATTGAGGCTTTACAGTACATGGAGGTTGATATCGTTGCCATAATTGGCCCACAATCTTCTGTAATGGCTCGTTTACTCTCACAACTTGCAAATGAACTCCAAATCCCACTACTGTCTTTCACAGACACAGATCCCAATCTTTCAGTCTTTCAGTACCCGTTCTTTGTCCAGACTACTCCAAGTGATCTATTCCAGATGACTGCAATTGCCGATATGATCAGTTACTATGGTTGGAGAAAAGTAACTGCAATCTTCACTGATGATGATAATGGACAAAGTGTTATAGCTGCATTAGGCGATAAACTTGCAGAACGACACTGTAAAATTTCTTACAAAGCAGCACTCCCCGCCGATCCTTTAGCAACTCGAGAAGAGATTACAGATAAATTGGTTAAGGTGGGATTGATGGAATCCCGGATTATTATTCTACATACACACCCCAATTTAGGTCTCTTGGTCTTTGATGTGGCCTACCATCTTGGAATGATGGGAAAAGGGTATGTGTGGATAGCTACTGCTTGGCTCTCTACTGTTTTACATTCGACATCTCCCCTCACTCCAGTGACTGCAAATTCGATCCAAGGAGCTCTCACGCTGCGTCCACACACCAGGTGGAACAAGCTGAGTGCAGGTTCTATTGGGTTGAATCCCTATGGTCTATATGCATATGATTCTGTATGGATGATTGCTAATGCAGTTAAAACCTTTCTCGATCAAGGCGGGACCATGTCATTTTCTAAGATTTCAAATCCAGTGGGAGGGAGTACTAGTCTACACCTTGAAGCAATAAGAATTTTTGATGGAGGGAAGCAGTTGTTGAACAATATATTGCAGACCAATATAACAGGTCTAACTGGGCCTATTCGGTTTCATTCAGACAGATCACTCATCCATCCCTCATATGATGTCATTAATGTGATTGGAACTAGCTATCGGCGAATTGGGTACTGGTCTAATTATTCCGGACTATCTGTTGTGCCGCCTGAGACACTCTATTTGAAGCCTCCGAACCGTTCGAATTCAAACCAACAACTACACAGCGTAATCTGGCCTGGGGAAACCACAAAAAAACCTGGTGGATTTTTCCCAAACAACGGAAGACGGTTGAGGATTGGAGTCCCTAAGCGGGTTACTTATAGGGAATTGGTTTCGCAAGTAAACGGTACTGACGAGTTCAAGGGATACTGCATAGATGTGTTTTTAGCTGCCATAAACTTGCTACCAGCCTTTCCATATAGGTTCATCCCCTATGGTGATGGTCGTAAGAACCCAAACTACAACGAGCTTTTAAATATGGTGGCATCAAATGTGTTTGATGCTGCCATAGGTGACATTTCAATTTTCTCGAACCGAACCAAGATTGTGGATTTTTCGCATCCATATCTCCAAACAGGCCTAGTTGTATTGATCCCAGTTAGGAAGTCAGAGTCGACTACTTGGGCTTTTCTGCAGCCATTTAGTCTAAAGATGTGGATTGTCATTACAGCTTCTTTCCTTCTTGTGGGAGCAGTTGTGTGGATTCTGGAGCATAGAGTGAATGATGAATTCCGAGGAACACCAAAACAACAAGTTGCTACCGTTCTATGGTTTAGCTTCTCAACTTCGTTTTCTACCCACAGAGAGAACACAAAAAGCACCCTTGGTCGCTTTGTGCTGATCATCTGGCTTTTTGTGATTTTTATAATCACTTCAAGCTACACTGCAAGTCTGACCTCAATCCTCACGGTGCATCAACTTTCCACCATCAAAGGAATCGAAAGCTTGATAGCGAGCGACAGGAATGTCGGATTCCTATCAGGGTCTTCAGCTGCAAACTACTTGATCGATGAACTGAAACTTCCTGACTCTAGACTTGTCGCTTTTGAAACAGTAAAAGAATTTGCTATAGCCCTTGAAAGGGGGATCGTTGATGCTGTGGTTGATGAACGACCATATGTAGAACTCTACCTTTCACGCCAGTGCAAGTTTTCAATTGTAGGCGATGAATTCGGCCATGTCGAGTGGGGATTTGCATTTCCGCATGGCTCTCCCCTAGCTGCTAACATGACAACTGCCATTCTGACATTGTTAGAGAATGGGGAACTCAAACAGATCTACAAAAATTGGTTGAAGATTCATGCTTGTACTTCACCGAGCACTAGTGAGCTTGAATTGGACCGGCTTCACCTTAGTAGCTTCTGGGGCCTCTTTCTCATAATCTGGATCGCAAGCTTCTTCGCTCTTCTCATATACTTCGTCATGACGGTACGCCAATTCAATCAGCAACGGTCTGATCGAGGTAGTACTTCATCATGGTCTGCACGCCTACGTACGTTCTTTTCTTTTGTCAACAGCAAAGAAGAGGAAACAAAGAGCAAGTCCAAGAGAGACTCCTCAACTACCAATGAAGAACAGTACTAA 2646 0.4335 MNLVWLLLLISVLYFGVFSNGVPSPTIVTIGAILNFDSINGRVSKIAMEAAVEDVNSDPSILGGIKLHLSMHNSNNTGILGVIEALQYMEVDIVAIIGPQSSVMARLLSQLANELQIPLLSFTDTDPNLSVFQYPFFVQTTPSDLFQMTAIADMISYYGWRKVTAIFTDDDNGQSVIAALGDKLAERHCKISYKAALPADPLATREEITDKLVKVGLMESRIIILHTHPNLGLLVFDVAYHLGMMGKGYVWIATAWLSTVLHSTSPLTPVTANSIQGALTLRPHTRWNKLSAGSIGLNPYGLYAYDSVWMIANAVKTFLDQGGTMSFSKISNPVGGSTSLHLEAIRIFDGGKQLLNNILQTNITGLTGPIRFHSDRSLIHPSYDVINVIGTSYRRIGYWSNYSGLSVVPPETLYLKPPNRSNSNQQLHSVIWPGETTKKPGGFFPNNGRRLRIGVPKRVTYRELVSQVNGTDEFKGYCIDVFLAAINLLPAFPYRFIPYGDGRKNPNYNELLNMVASNVFDAAIGDISIFSNRTKIVDFSHPYLQTGLVVLIPVRKSESTTWAFLQPFSLKMWIVITASFLLVGAVVWILEHRVNDEFRGTPKQQVATVLWFSFSTSFSTHRENTKSTLGRFVLIIWLFVIFIITSSYTASLTSILTVHQLSTIKGIESLIASDRNVGFLSGSSAANYLIDELKLPDSRLVAFETVKEFAIALERGIVDAVVDERPYVELYLSRQCKFSIVGDEFGHVEWGFAFPHGSPLAANMTTAILTLLENGELKQIYKNWLKIHACTSPSTSELELDRLHLSSFWGLFLIIWIASFFALLIYFVMTVRQFNQQRSDRGSTSSWSARLRTFFSFVNSKEEETKSKSKRDSSTTNEEQY* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00808 881 SUPERFAMILY Periplasmic binding protein-like II 446 786 - -
Eupl13g00808 881 SUPERFAMILY Periplasmic binding protein-like I 24 400 IPR028082 -
Eupl13g00808 881 Pfam Bacterial extracellular solute-binding proteins, family 3 470 786 IPR001638 -
Eupl13g00808 881 PIRSF IGluLR_plant 1 881 IPR017103 -
Eupl13g00808 881 CDD PBP1_GABAb_receptor_plant 30 409 IPR044440 -
Eupl13g00808 881 FunFam Glutamate receptor 143 296 - -
Eupl13g00808 881 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 861 IPR015683 -
Eupl13g00808 881 Gene3D - 720 750 - -
Eupl13g00808 881 FunFam Glutamate receptor 446 561 - -
Eupl13g00808 881 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 41 57 - -
Eupl13g00808 881 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 101 129 - -
Eupl13g00808 881 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Eupl13g00808 881 Pfam Ligand-gated ion channel 787 818 IPR001320 GO:0015276|GO:0016020
Eupl13g00808 881 SMART AABind_6 450 788 IPR001638 -
Eupl13g00808 881 Pfam Receptor family ligand binding region 46 390 IPR001828 -
Eupl13g00808 881 SMART GluR_14 450 787 IPR001320 GO:0015276|GO:0016020
Eupl13g00808 881 FunFam Glutamate receptor 751 784 - -
Eupl13g00808 881 Gene3D - 751 784 - -
Eupl13g00808 881 Gene3D - 449 560 - -
Eupl13g00808 881 MobiDBLite consensus disorder prediction 860 881 - -
Eupl13g00808 881 Gene3D - 143 405 - -
Eupl13g00808 881 Gene3D - 561 689 - -
Eupl13g00808 881 Gene3D - 46 380 - -
Eupl13g00808 881 FunFam Glutamate receptor 561 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00808 Eupl-Chr13 11977183 11981727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00808 1 871 Ion Channels AT1G42540 52.935 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00808 K05387 - nnu:104603791 1154.43