Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00801 ATGGCTGAAAGCTGGGATGGAAGTTATGACACTGGTAGCCAGTCTGATGAGAGCTATCACCTTGAAAGAACACACATTGAGCCTATTTATGATGCATTTGTGTGCCCTCTAACAAAACAAGTAATGCGTGATCCCGTTACCTTAGAAAATGGGCAAACTTTTGAGCGAGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAAGAGAGTGGAAGGAAGCTAGTTTGTCCTTTGACACTGAAAGAGTTAAGAAGCACCGACCTGAACCCTAGTATGGCTCTACGAAACACAATTGAAGAATGGACTATAAGGAATGAAGCTGCTCAGCTTGATATTGCTCGTAGCTCACTGTCTCTGAAGCGGTCAGAACAAGATGTTCTGCATGCCTTGAAGTATATCCAGCACATCTGCCAGAAAAGCAGATCCAATAAGCATGTTGTTCGCAATGCAGAGTTAATACCAATGATTGTTGACATGTTAAAGAGCAGCAGTCGGAGAGTTCGGTGTATAACCCTAGAAACCCTACGTATTGTGGCAGAAGAGGATGTAGATAATAAGGAGGTAATGGCGGAAGGGGACACTGTACGCACAATTGTTAAATTCTTGTCTCACGAGCTTTCGAAGGAGAGGGAGGAGGCTGTGTCTTTGCTGTATGAACTCTCAAAATGTGAAGCTCTGTGTGAAAAGATTGGTGGGGTCAATGGTGCAATTCTTATATTAGTTGGGATGACGAGCAGCAAATCAGAGAATATTTTGACTGTCGAGAAAGCAGACAAAACCCTGGAGAATCTGGAGAGGTGTGAGAAAAATGTGCGGCATATGGCTGAAAATGGTAGACTGCAGCCTCTTCTTACACTTCTTCTTGAAGGTTCCCCTGAAACCAAATTGGCAATGGCTGCATACCTCGGTGAGCTGGTTCTGAGCAATGATGTGAAGGTCTTTGTGGCCAGAAGAGTGGGTTCATCGCTGGTGAACGTCATGAAAAGCGGCAACATGCAGTCAAGAGAAGCTGCACTGAAGGCTCTGAACCAGATTTCATCTTGCGAGGCAAGTGCCCAAGTGTTGATAGAAGCTGGGATACTTCCCCCACTTGTGAAGGACCTTTTCTCGGTGGGTGTCAATCAGCTTCCAATGAGGTTGAAAGAGGTCTCTGCAACAGTTCTTGCCAATATTGTTAACGCAGGATATGACTTTGATTCTGTCCCACTTGGGCCTGACCACCAGACTCTGGTCTCTGAAGACACAGTGCACAATCTACTCCATCTCATCAGCAACACCGGTCCTGCCATTGAGTGCAAGCTTCTTCAGGTTCTTGTTGGACTCACCAGTTCTCCCACTACTGTTCTGAATGTGGTTGCGGCCATTAAAAGCTCTGGTGCTACCATCAGTTTGATTCAGTTCATCGAAGCTCCACAGAAGGATCTGCGTGTGGCTTCGATAAAACTTCTCCAAAACCTCTCGCCTCTCATGGGTCAAGAGCTAGCTGATGCCCTACGTGGCACAGCCGGACAGCTTGGTAGCCTGATCAAAGTCATCTCTGATACCAACGGGACCATGGAAGAGCAGGCTGCAGCTGTTGGTCTGTTAGCTGACCTTCCAGAGAGGGATTTAGGCCTCACTCGGCAGCTGCTGGATGAAGGTGCCTTTGAAGTAGTCTTCTCCAGGGTGGTCAGGATCCGGCAAGGGGAGACCCGGAACAGCCGCTTTGTGACTCCATATCTAGAAGGGCTTGTGCAGGTTCTAGCAAGGCTCACATTTGTCTTGGACGACGAGCCTAATGCTGTTGTTCTGGCACGTGAGCACAATCTTGCTGCGCTGTTCACTGATCTGCTTCAGTCGAATGGTCTTGACAAGTTACAGATGGTGTCTGCTATGGCTTTGGAGAATCTATCCCTAGAGTCCAAACGGTTGACACAAGTGCCGGAGTTGCCAAAACCTGGGTTTTGTGCTTCGATCTTCCCCTGTTTAAGCAAGCAGCCGGTGGTCACTGGGTTGTGCCGGCTCCACCATGGGACCTGTTCTTGGAAGGATACCTTTTGTCTTTTGGAAGGAAAAGCTGTGGGAAAATTGGTGGCCTGTTTAGACCACACGAACGAGAAGGTGGTTGAAGCGGCACTTGCGGCCTTGTGCACTTTGTTGGATGATGAGGTCGACATCGAGCAAGGTGTGGTGGTCTTGTGTGAGGTGGAGGGAATCAAGCCGATACTTGATGTATTGCTTGAGAATCGGACGGAGATCCTGAGGCAGCGGTCAGTTTGGGCTGTTGAAAGGATTTTGAGGACCGAAGACATTGCTTATGAAGTTTCGGGCGATCCAAATGTGAGCACTGCACTGGTTGATGCGTTCCGGCACGGTGACTATCGGACTCGGCAGATTGCTGAACGTGCCCTGAAGCATGTTGACAAGATACCAAACTTCTCTGGCGTTTTCCCCAACATGGGTAGGCCTCTTTAA 2451 0.4823 MAESWDGSYDTGSQSDESYHLERTHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLKELRSTDLNPSMALRNTIEEWTIRNEAAQLDIARSSLSLKRSEQDVLHALKYIQHICQKSRSNKHVVRNAELIPMIVDMLKSSSRRVRCITLETLRIVAEEDVDNKEVMAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKCEALCEKIGGVNGAILILVGMTSSKSENILTVEKADKTLENLERCEKNVRHMAENGRLQPLLTLLLEGSPETKLAMAAYLGELVLSNDVKVFVARRVGSSLVNVMKSGNMQSREAALKALNQISSCEASAQVLIEAGILPPLVKDLFSVGVNQLPMRLKEVSATVLANIVNAGYDFDSVPLGPDHQTLVSEDTVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLNVVAAIKSSGATISLIQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGTAGQLGSLIKVISDTNGTMEEQAAAVGLLADLPERDLGLTRQLLDEGAFEVVFSRVVRIRQGETRNSRFVTPYLEGLVQVLARLTFVLDDEPNAVVLAREHNLAALFTDLLQSNGLDKLQMVSAMALENLSLESKRLTQVPELPKPGFCASIFPCLSKQPVVTGLCRLHHGTCSWKDTFCLLEGKAVGKLVACLDHTNEKVVEAALAALCTLLDDEVDIEQGVVVLCEVEGIKPILDVLLENRTEILRQRSVWAVERILRTEDIAYEVSGDPNVSTALVDAFRHGDYRTRQIAERALKHVDKIPNFSGVFPNMGRPL* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00801 816 Gene3D - 112 235 IPR011989 -
Eupl13g00801 816 Gene3D - 236 315 IPR011989 -
Eupl13g00801 816 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Eupl13g00801 816 Gene3D - 573 803 IPR011989 -
Eupl13g00801 816 CDD RING-Ubox_PUB 30 87 IPR045210 -
Eupl13g00801 816 SUPERFAMILY ARM repeat 116 444 IPR016024 -
Eupl13g00801 816 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Eupl13g00801 816 SMART arm_5 266 306 IPR000225 GO:0005515
Eupl13g00801 816 SMART arm_5 673 713 IPR000225 GO:0005515
Eupl13g00801 816 SMART arm_5 139 179 IPR000225 GO:0005515
Eupl13g00801 816 SMART arm_5 347 392 IPR000225 GO:0005515
Eupl13g00801 816 SMART arm_5 181 221 IPR000225 GO:0005515
Eupl13g00801 816 SMART arm_5 589 631 IPR000225 GO:0005515
Eupl13g00801 816 SUPERFAMILY RING/U-box 23 110 - -
Eupl13g00801 816 SUPERFAMILY ARM repeat 382 798 IPR016024 -
Eupl13g00801 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 111 IPR013083 -
Eupl13g00801 816 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Eupl13g00801 816 Coils Coil 256 276 - -
Eupl13g00801 816 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 809 - -
Eupl13g00801 816 Gene3D - 316 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00801 Eupl-Chr13 11898547 11911065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00801 7 813 U-box Gene Family AT1G76390 65.019 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00801 - - msin:131243342 1344.72