Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00786 ATGAAACGTGCCAGAAACGACAGAGCCAGCAAAAAACCAGCGAAGGATCCCGACGAGCCTAAAAGTCCCGCGACTGCTTTTTATGTTTTCCTGGAGGAGTTCAGGAAGCAGCAGAAGGAGAAACACCCTAACATCAATATTGTTAATCTCGAGAAAATTTGTGAAAAGAAATGGAAGTCGATGTCAGAATCTGAGAAAGCTCCGTATGTAGCGATGGCAAAGAAAAGTAAGAGCGAATATAACAAGAAATTTGGGGGCTACTTTGTGGAGAAGGAAAAAAATCAGGCTGAGGTAACAAATGCGGTGAAAGAGAAACCTAAGCCTAAAGTGAGCAATGAGGAGGACGAAGAGGAGACTCAGGAGAACGGAGAGGAGATACGGGTGGACAGGGATACTAATGAACCTCTAACTGTGCCACAGCCAGTAGTGCAAGATGATGACTCTGTACATTCACCTGAAGACTCAGATATCAATAGAGAATCTAATAAGCGGCGATTGACATCACCTAGTTCGTGTCATAGCAAGCAAAAGATAACCGATGTTAGTGAATTATCCAAAGTTTTGCTGGAGTTATTAGAATTGCAAAGATTTAGGGCAATGTTGTCAAGATCTATTGATGACCCATATACTCTCAACAAGTGCATCAATGCATTAGAGGCAATGGAAGGCATTACTGAGAAGGAGATATTTCGTGCAATAAAATTATTTGAGAAACCCCATGCAAGAGAGGCGTTTATGTCCCTTAAATCACATCGCCGATTGAATTGGTTAAGGGACGAACTTTGCTCAATACCATAG 798 0.4198 MKRARNDRASKKPAKDPDEPKSPATAFYVFLEEFRKQQKEKHPNINIVNLEKICEKKWKSMSESEKAPYVAMAKKSKSEYNKKFGGYFVEKEKNQAEVTNAVKEKPKPKVSNEEDEEETQENGEEIRVDRDTNEPLTVPQPVVQDDDSVHSPEDSDINRESNKRRLTSPSSCHSKQKITDVSELSKVLLELLELQRFRAMLSRSIDDPYTLNKCINALEAMEGITEKEIFRAIKLFEKPHAREAFMSLKSHRRLNWLRDELCSIP* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00786 265 CDD HMG-box_AtHMGB1-like 21 80 - -
Eupl13g00786 265 Pfam HMG (high mobility group) box 20 84 IPR009071 -
Eupl13g00786 265 MobiDBLite consensus disorder prediction 93 114 - -
Eupl13g00786 265 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 121 IPR031061 -
Eupl13g00786 265 Gene3D High mobility group box domain 4 88 IPR036910 -
Eupl13g00786 265 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 20 88 IPR009071 -
Eupl13g00786 265 SMART hmgende2 19 89 IPR009071 -
Eupl13g00786 265 MobiDBLite consensus disorder prediction 1 23 - -
Eupl13g00786 265 MobiDBLite consensus disorder prediction 93 175 - -
Eupl13g00786 265 SUPERFAMILY HMG-box 8 88 IPR036910 -
Eupl13g00786 265 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00786 Eupl-Chr13 11639962 11654425 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl13g00786 HMG_box 7.1e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00786 K25507 - ming:122071310 114.775