Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00777 ATGGTTCAACAAATGATCGACTCTAAATTCAATGAGTATGGACTGGCCAATACCAGAGCTGGCTTTCCCATTTGTGATAAGCAACAGCCGATAGCAGTAAAGAAGACAGCATTAAGAGATTTGCAGAATGATAACAGAATTTTGGTACTCAAAACCCTGGGAAACACTTCATTTCTGAAGGATAGAGGACCCATTACAAATGCCATCAAGGTTTCTGGTACCAAGAGACCCACACCTGAGTGCCCTCCGAGCCCTCCCTGCCACCAGTCTTCGAGCAATAATGGTGCAAATGGGCATCTTGTGTACATCCGTAGGAGATCTGAACAAGAACTAGTCAAGAGCAACACTTGTGACAGCGCAGACAACAATTCCGATTGTCCACAACCGAGACAATTTACCCATGGTGAACATGAAACAACCTGGCAACAAACCCATATGCAAGGGTCAAAGATTTCTTGTTTTCCAGCATTTGCACCCATTCCAATGGCTTCTTTGATTACCTTCTCATCTGGAGGACCTTCTGTTCCTCTTTCTCTTGGAAAGCTTGTTAATGTGTTGCCACCAGCAGAACCGAATTATCCCACAGTTACGTTTGGGGTTCCTCCGGTTATCCCTCAGAGGGCAAATGATGAACATTGGAAAGAGCGGTTCGTTCGATTGCAGACATTCTTGAGGAGCTGTGAAAATTCAAGTCTAGACGATTACATCCAGGTGCTTCGATCTTTACCCTCGGTTGGCCGTAGCAGACATGCTTTTGAATTGGAAAAAAGAGCCATCCAACTTCTATTGGAGGAAGGAAAAGAGTTGCATAGGATGAAGCTTCTGAATGTCTTGGGGAAAGCTTTACCAAAGAATAATGTTTCGCCCACAACTCCACAAGTTCAATCAGAGAAGCAAGAAAGCTTTGAAAATTTCAGGCTTCAGATCGTTGGCGACATCGGTCCTGGTCCCGGTCCTGGTCCCAGTCCGGGTCCGGGTCCCAGTCCCGGTCCTGGCAGATCTAGCGAAAACCACAGGAAGAAAAGATCAAAACTTATCCGCATTGGCGAACCTGCTGCGGCTTCACAATCGAACAGTTTTTTGAAGCCAAACTCTGGAAAGAAACCGGAACCTGGCGCTCCAAAGATCACACCTCCATGTAGCGAGTGTGGTAAGCAATTTTGGTCATGGAAGGCCTTATTTGGGCATATGCGATGCCACCCCGAGCGTCAGTGGCGCGGGATCAAACCACCACCAAATTTTCAACGACCAATGTCACCCGAAAACCTGGTAGCAGGTCCTGGAGCAAAATTGACTGTGGAGGATCACGAAATTGCGGCATGTCTAGTAATGCTGGCAAATGGGTCAACTGCAACGGACACACCGTGCATTACGTTCGATCGGGGACTACCAGAGGCAGTAGATTTCGTTGGGGAGCCATCAGGGGCTGGGGATGTGGATGGAATCAGCCCATCGAGTTTGAATTGTCGATTCGAGTGTTCGAGTTGCAAGAAAGTGTTTGGGTCTCACCAGGCACTAGGGGGGCACAGGGCTAGTCATAAGAATGTTAAAGGGTGTTTCGCAATTGCAAGGAACGACGGCGAAGACGAAGAACGGAACTGCGATCACGATGACGACGGTGACGGAAACGTCATCGGAGAAGGGAAGGTGATCAAAGAGAGTGGAGAGGAGGAGATGGTCATGGGTTTAGGTCACAAATGTAGCATATGTCAAAAGGTTTTCTCTAGTGGTCAAGCCCTTGGTGGGCACAAGAGGAGCCATTGGGAGAAAGTGGAGGACCCACCACCACTTGGGTTGAACCCTTCCATCACAAGGGAGGGTTGTGGTTTGGACCTAAACTTGCCTGCCCCAAATGAGACTGATGGGCCCTCTTCTTCTTCATCTTCAGTCCTTGTATTGGATCTTAGGTTGGGGATTTGA 1920 0.4813 MVQQMIDSKFNEYGLANTRAGFPICDKQQPIAVKKTALRDLQNDNRILVLKTLGNTSFLKDRGPITNAIKVSGTKRPTPECPPSPPCHQSSSNNGANGHLVYIRRRSEQELVKSNTCDSADNNSDCPQPRQFTHGEHETTWQQTHMQGSKISCFPAFAPIPMASLITFSSGGPSVPLSLGKLVNVLPPAEPNYPTVTFGVPPVIPQRANDEHWKERFVRLQTFLRSCENSSLDDYIQVLRSLPSVGRSRHAFELEKRAIQLLLEEGKELHRMKLLNVLGKALPKNNVSPTTPQVQSEKQESFENFRLQIVGDIGPGPGPGPSPGPGPSPGPGRSSENHRKKRSKLIRIGEPAAASQSNSFLKPNSGKKPEPGAPKITPPCSECGKQFWSWKALFGHMRCHPERQWRGIKPPPNFQRPMSPENLVAGPGAKLTVEDHEIAACLVMLANGSTATDTPCITFDRGLPEAVDFVGEPSGAGDVDGISPSSLNCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAIARNDGEDEERNCDHDDDGDGNVIGEGKVIKESGEEEMVMGLGHKCSICQKVFSSGQALGGHKRSHWEKVEDPPPLGLNPSITREGCGLDLNLPAPNETDGPSSSSSSVLVLDLRLGI* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00777 639 ProSitePatterns Zinc finger C2H2 type domain signature. 380 400 IPR013087 -
Eupl13g00777 639 SUPERFAMILY beta-beta-alpha zinc fingers 565 590 IPR036236 -
Eupl13g00777 639 PANTHER INTEGRAL MEMBRANE HEMOLYSIN-III-LIKE PROTEIN 5 297 - -
Eupl13g00777 639 SMART c2h2final6 565 587 IPR013087 -
Eupl13g00777 639 SMART c2h2final6 491 513 IPR013087 -
Eupl13g00777 639 SMART c2h2final6 378 400 IPR013087 -
Eupl13g00777 639 MobiDBLite consensus disorder prediction 309 378 - -
Eupl13g00777 639 MobiDBLite consensus disorder prediction 70 97 - -
Eupl13g00777 639 MobiDBLite consensus disorder prediction 316 330 - -
Eupl13g00777 639 Pfam C2H2-type zinc finger 490 514 - -
Eupl13g00777 639 Pfam C2H2-type zinc finger 380 402 - -
Eupl13g00777 639 Pfam C2H2-type zinc finger 565 589 - -
Eupl13g00777 639 ProSitePatterns Zinc finger C2H2 type domain signature. 493 513 IPR013087 -
Eupl13g00777 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 565 587 IPR013087 -
Eupl13g00777 639 MobiDBLite consensus disorder prediction 608 628 - -
Eupl13g00777 639 SUPERFAMILY beta-beta-alpha zinc fingers 379 513 IPR036236 -
Eupl13g00777 639 Gene3D Classic Zinc Finger 489 587 - -
Eupl13g00777 639 ProSitePatterns Zinc finger C2H2 type domain signature. 567 587 IPR013087 -
Eupl13g00777 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 491 518 IPR013087 -
Eupl13g00777 639 ProSiteProfiles Zinc finger C2H2 type domain profile. 378 405 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00777 Eupl-Chr13 11408673 11415013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00777 367 639 C2H2 Transcription Factor Family AT4G35280 48.214 1.60e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g00777 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00777 - - csin:114277591 352.443