Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00776 ATGGCTGCGGACGGCGATTCTAGCGATGCGACCGATTCGGGCGTCTGTGGTGGAGTCACCGTGCACGTTCGATGCTCGAATGGTTCGAAGTTCTCCGTGCAGACCAGCCTTGAATCTACGGTCAGTGCATTCAAAGTTGTTCTGTCGCAGAATTGCGATGTTCCAGCGGAGCAGCAGCGGTTGATTTACAAGGGTCGGATCTTGAAGGATGACCAAACCCTAGAAAGCTATGGTTTGCAGGCAGATCACACTGTTCACATGGTTCGTGGTTTACCAGCTGCATCGACCAATGCCACTGGTGCAACCAATGTTGGAGGTCCAAACACCACTCCTGGTGTTGCAAGAGGTATTGGGTCCAATGAAGGTGGGGGCTTTGGAGGAGCCGGTCTTGGAGCATCACTATTTCCTGGACTTGGTGTCAATAGCCTAGGTGGAAGTGGAGTACCTGGTTTATTTGGAGCTGGACTCCCGGAGTTTGAACAAGTGCAGCAACAACTGACTCAGAACCCCAACATGATGAGGGAAATAATGAACATGCCCGTCATCCAGAACCTAATGAATAACCCTGACCTAATGCGTAACTTGATAATGAGCAATCCTCAAATGCGTGAAATAATTGATCGGAACCCCGACCTTGCTCATATACTTAATGATCCCAGTACTCTTCGGCAGACGTTAGAAGCTGCAAGGAACCCCGAACTCATGCGGGAGATGATGCGGAACACTGACAGGGCGATGAGCAACATAGAATCTTCTCCTGAAGGATTCAACATGCTCCGACGCATGTATGAAACTGTTCAGGAGCCATTTCTTAATGCAACAACAATGGCTGGAGACACTGGAAATGATTTAGGTTCAAACCCATTCGCTGCCCTTTTAGGGAACCAAGGTGGGGGCCAGGCCAGGGATCGGTCCACTAACCCTTCGACCACCGGTTCTGAAACCACTACTGGGTCCCCTGCACCAAATACTAACCCGCTTCCCAACCCATGGAGCAGTGGTGGTGCTGCAGGAGGTGCACAAACAAACACCGCACCTAGGTCTAATCCAGCTGGCGATGCAAGGGCACCTGGTATTGGTGGCTTAGGTGGGCTTGGTCTTCCAGAGATGGAACGGATGTTTGGTGGCATGCAGGATTCTTCTCAAATGAATCAATTTATGCAAAATCCAGCTGTGTCACAGATAATGCAAAGCCTCCTCTCTAATCCTCAGTACATGAACCAGATTCTCAATCCCCAACTGCGCAGTATGCTTGATTCCAATTCTCAATTAAGAGACATGATGCAAAACCCAGAATTTCTTCGCCAGTTGACTTCCCCCGAGACAATGCAGCAAGTTTTGGCTTTACAGCAATCACTTCTATCTACGCTTGGCCGGCAACAATCAGCCCAGGAACCGGGTCAGATTGGTGGTGGCACAGGAACACCGAACAATATGGGGTTGGACTTGTTGATGAACATGTTCAGCGGGCTTGGGGCTGGTGGCCTGACTGTTCCCAACACATCTGACGTGCCACCGGAACAACTTTACTCCACTCAATTGTCACAGCTTCAAGAAATGGGTTTCTTTGACACCCAAGAGAACATTCGTGCATTGAGCGCCACTGCAGGGAATGTCCATGCAGCGGTGGAACGACTCTTGGGAAACCTCGCAAAACATGCGGGCACATTCAAACTCCATTTTGGGCATGAATAA 1695 0.4997 MAADGDSSDATDSGVCGGVTVHVRCSNGSKFSVQTSLESTVSAFKVVLSQNCDVPAEQQRLIYKGRILKDDQTLESYGLQADHTVHMVRGLPAASTNATGATNVGGPNTTPGVARGIGSNEGGGFGGAGLGASLFPGLGVNSLGGSGVPGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPVIQNLMNNPDLMRNLIMSNPQMREIIDRNPDLAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGDTGNDLGSNPFAALLGNQGGGQARDRSTNPSTTGSETTTGSPAPNTNPLPNPWSSGGAAGGAQTNTAPRSNPAGDARAPGIGGLGGLGLPEMERMFGGMQDSSQMNQFMQNPAVSQIMQSLLSNPQYMNQILNPQLRSMLDSNSQLRDMMQNPEFLRQLTSPETMQQVLALQQSLLSTLGRQQSAQEPGQIGGGTGTPNNMGLDLLMNMFSGLGAGGLTVPNTSDVPPEQLYSTQLSQLQEMGFFDTQENIRALSATAGNVHAAVERLLGNLAKHAGTFKLHFGHE* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00776 564 CDD UBA_PLICs 510 548 - -
Eupl13g00776 564 SMART uba_6 510 548 IPR015940 -
Eupl13g00776 564 Pfam Ubiquitin family 21 89 IPR000626 GO:0005515
Eupl13g00776 564 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 508 549 IPR015940 -
Eupl13g00776 564 FunFam Ubiquitin domain-containing protein DSK2b 16 103 - -
Eupl13g00776 564 MobiDBLite consensus disorder prediction 277 372 - -
Eupl13g00776 564 SMART CBM 148 186 IPR006636 -
Eupl13g00776 564 SMART CBM 370 409 IPR006636 -
Eupl13g00776 564 SMART CBM 199 238 IPR006636 -
Eupl13g00776 564 SMART CBM 411 446 IPR006636 -
Eupl13g00776 564 MobiDBLite consensus disorder prediction 299 349 - -
Eupl13g00776 564 Gene3D - 492 554 - -
Eupl13g00776 564 Gene3D - 17 103 - -
Eupl13g00776 564 Pfam UBA/TS-N domain 510 546 IPR015940 -
Eupl13g00776 564 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Eupl13g00776 564 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Eupl13g00776 564 SMART ubq_7 19 90 IPR000626 GO:0005515
Eupl13g00776 564 Gene3D - 194 252 - -
Eupl13g00776 564 SUPERFAMILY Ubiquitin-like 16 101 IPR029071 -
Eupl13g00776 564 PANTHER UBIQUILIN 12 547 IPR015496 -
Eupl13g00776 564 CDD Ubl_Dsk2p_like 19 90 - -
Eupl13g00776 564 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Eupl13g00776 564 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00776 Eupl-Chr13 11380666 11394390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00776 21 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 29.412 4.59e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00776 K04523 - nnu:104587120 888.641