Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00748 ATGCCTATCTTTCTATACTTCCTCTTCTTTCTCATCTCCTCTGTAACTGCGTGTGATCGTTGTGTGCATCAAAGTAAGGCTGCTTATTTCTCCTCCTCTTCTCAACTCTCATCTGGGGCTTGTGGGTATGGTTCATTTGCTTTGGGCTTCAATGGTGGACACCTTGCAGCTGGTGTCCCTTCTCTTTATAGAGATGGTGTTGGCTGTGGAGCGTGCTTTCAGATAAGATGCAAGAACGAGAGCATTTGTAGCAGAAGAGGGACTAAAGTGATCTTAACCGATCTTAATCGAAATAACAAAACAGATTTCGTTCTCAGTAACAGAGCATTTATGGCAATGGCTCGTGAGAATATGGCCCAAGACATGTTTAAGCTTGGGATTGTCGACGTGCAATACAAGAGGGTACCTTGTGAATATAAAAACCAAAATTTATCTATAAGAGTAGAAGAGACAAGCCAAAAGCAACAGTATTTAGCAATTAAGTTCCTCTACCAAGGCGGCCAGACCGACATCATCGGTGTGGATGTAGCTCAGGTTGATTCTTCGAGTTGGGGTTACATGAGCCGGAATTATGGGGCGGTCTGGGACACAAGTCGAGTTCCAATGGGGTCGTTGCAGTTTCGGCTAGTCGTAACAGGAGGCTATGATAGGAAGTGGGTCTGGGCAAAGCAAGTCCTCCCTTCTGACTGGAAGGCTGGGGTGGTCTATGATTCGAGTGTTCAAATCAGTGATATTGCTCAGGAAGGTTGCTCTCCTTGTGATGATAAGGAGTGGAAGTGA 780 0.4538 MPIFLYFLFFLISSVTACDRCVHQSKAAYFSSSSQLSSGACGYGSFALGFNGGHLAAGVPSLYRDGVGCGACFQIRCKNESICSRRGTKVILTDLNRNNKTDFVLSNRAFMAMARENMAQDMFKLGIVDVQYKRVPCEYKNQNLSIRVEETSQKQQYLAIKFLYQGGQTDIIGVDVAQVDSSSWGYMSRNYGAVWDTSRVPMGSLQFRLVVTGGYDRKWVWAKQVLPSDWKAGVVYDSSVQISDIAQEGCSPCDDKEWK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00748 259 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Eupl13g00748 259 CDD DPBB_EXLA_N 13 139 - -
Eupl13g00748 259 Gene3D - 12 138 IPR036908 -
Eupl13g00748 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Eupl13g00748 259 Pfam Lytic transglycolase 56 132 IPR009009 -
Eupl13g00748 259 Pfam Expansin C-terminal domain 146 227 IPR007117 -
Eupl13g00748 259 PANTHER EXPANSIN-B3 12 241 - -
Eupl13g00748 259 SUPERFAMILY Barwin-like endoglucanases 7 141 IPR036908 -
Eupl13g00748 259 Gene3D - 139 242 IPR036749 -
Eupl13g00748 259 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Eupl13g00748 259 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Eupl13g00748 259 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576
Eupl13g00748 259 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Eupl13g00748 259 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Eupl13g00748 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00748 Eupl-Chr13 10946101 10950224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00748 36 258 Expansin Gene Family AT3G45970 59.292 1.22e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00748 - - ming:122074635 421.394